FC919306

Overview
NameFC919306
Unique NameFC919306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig417 contig Ccv1_Contig417:2..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919306 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.698e-29
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 1
Query:   19 SCEDGSKEQRFKSSVTLSSAKSTAGFA---YIYSPSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDET 282
            S +D  +E   KSS+ +  ++S +  A    +Y  SEDEDVCPTCLEEYT ENPKIVTKCSHHFHL CIYEWMERSENCPVCGKVM F+ET
Sbjct:  140 SDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230          
The following BLAST results are available for this feature:
BLAST of FC919306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH5.698e-2967.03E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC06055A08T7 PCR Citrus clementina cDNA clone C06055A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919306 ID=FC919306; Name=FC919306; organism=Citrus clementina; type=EST; length=635bp
AGACAAGGGAATGATTCATCCTGTGAAGATGGATCGAAAGAACAACGTTT
TAAATCCTCAGTTACGCTTTCATCGGCAAAATCAACAGCTGGATTTGCGT
ATATTTATTCTCCATCAGAAGATGAAGATGTCTGTCCAACATGTCTTGAA
GAATATACGCCAGAGAACCCCAAAATAGTGACAAAATGTTCTCACCATTT
CCACCTTGGTTGTATTTATGAATGGATGGAGAGAAGTGAAAACTGCCCTG
TCTGTGGCAAGGTGATGGTTTTTGATGAAACGACTTGATCTTTCAAAGGT
TTTGTTCGTGGATGGAACCAGCAACAACTGAAGAAAGAATGTTTAAATCA
AAGGAGACCTGTAAATCCATTTGTGAATATGAAGTCATTTGTGTCGGCTA
CAGTAAATACAAAAAGTGTCATTCAAATCATTGATGATTTTCCCCTTGTG
TTACTGAAAATCTGGCTTTAGCCTCCAGAAAAATAGCATTTTACATTGAA
GTGTGAGTGGAATGAAGAGAAACATGATTTTAGTTGTGGTATATTTGTCT
TTCCTGTGTCATTTTTATGTATCTTACATGACTCAGATCTCATGGAAAAA
GGTAAAAATAATGTTTATGAAAAAAAAAAAAAAAA
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