FC919311

Overview
NameFC919311
Unique NameFC919311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length310
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A1C_PHAAU (1-aminocyclopropane-1-carboxylate synthase (Fragment) OS=Phaseolus aureus GN=ACS5 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.626e-40
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQ--DIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT +DR+TL+ +VSFINEK IHLVCDEIYAATVF+ +  F+SIAEI++   DI C+RNL+HIVYSLSKDMGFPGFRVGIIYSYND VV+CARKMSSFG V
Sbjct:  159 PSNPLGTIMDRKTLRTVVSFINEKRIHLVCDEIYAATVFS-QPGFISIAEILEDETDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLV 262          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A1C_SOYBN (1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.185e-38
Identity = 79/105 (75.24%), Postives = 89/105 (84.76%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEII--DQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT +DR TL+ ++SFINEK IHLV DEIY+ATVF+   SF+SIAEI+  D DI C+RNL+HIVYSLSKDMGFPGFRVGIIYSYND VV CARKMSSFG V
Sbjct:  208 PSNPLGTVMDRNTLRTVMSFINEKRIHLVSDEIYSATVFS-HPSFISIAEILEEDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVHCARKMSSFGLV 311          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A11_ARATH (1-aminocyclopropane-1-carboxylate synthase-like protein 1 OS=Arabidopsis thaliana GN=ACS1 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.590e-37
Identity = 76/101 (75.25%), Postives = 86/101 (85.15%), Query Frame = 1
Query:    7 NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            NPLGT LDRETL+ +VSFIN+K IHLVCDEIYAATVF  E  F+S+AEII +    NR+LIHIVYSLSKDMG PGFRVG++YSYND VVSCAR+MSSFG V
Sbjct:  206 NPLGTSLDRETLESLVSFINDKQIHLVCDEIYAATVFA-EPGFISVAEIIQEMYYVNRDLIHIVYSLSKDMGLPGFRVGVVYSYNDVVVSCARRMSSFGLV 305          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A1C_TOBAC (1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 74/104 (71.15%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIA-CNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT LDR+TLK++++F N+ NIHLVCDEIYAATVF     FVSIAEI+D + + CN++L+HIVYSLSKDMG PGFRVGI+YS+ND VV+CARKMSSFG V
Sbjct:  208 PSNPLGTTLDRDTLKNLLTFTNQHNIHLVCDEIYAATVF-NTPQFVSIAEILDDETSHCNKDLVHIVYSLSKDMGLPGFRVGIVYSFNDAVVNCARKMSSFGLV 310          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A14_SOLLC (1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT LDR+TLK I +F NE NIHLVCDEIYAATVF     FVSIAEII++D   N++L+HIV SLSKD+GFPGFRVGI+YS+ND VV+CARKMSSFG V
Sbjct:  213 PCNPLGTILDRDTLKKISTFTNEHNIHLVCDEIYAATVFNSPK-FVSIAEIINEDNCINKDLVHIVSSLSKDLGFPGFRVGIVYSFNDDVVNCARKMSSFGLV 314          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A12_SOLLC (1-aminocyclopropane-1-carboxylate synthase 2 OS=Solanum lycopersicum GN=ACS2 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 2.999e-36
Identity = 75/105 (71.43%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQD--IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT LD++TLK ++SF N+ NIHLVCDEIYAATVF     FVSIAEI+D+     CN++L+HIVYSLSKDMG PGFRVGIIYS+ND VV+CARKMSSFG V
Sbjct:  207 PSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ-FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLV 310          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A16_ARATH (1-aminocyclopropane-1-carboxylate synthase 6 OS=Arabidopsis thaliana GN=ACS6 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.260e-34
Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT LDRE LK +V+F N+K IHL+ DEIYAAT F  +S F+S+AE+I++   CNR+LIHIVYSLSKDMG PG RVGI+YSYND+VV  ARKMSSFG V
Sbjct:  211 PSNPLGTTLDRECLKSLVNFTNDKGIHLIADEIYAATTFG-QSEFISVAEVIEEIEDCNRDLIHIVYSLSKDMGLPGLRVGIVYSYNDRVVQIARKMSSFGLV 312          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A11_PRUMU (1-aminocyclopropane-1-carboxylate synthase 1 OS=Prunus mume GN=ACS1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.646e-34
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT LDR TL+ +V FIN+KNIHLVCDEIYAATVF+  + F  I+E+I Q++ CN NLIHIVYSLSKDMG PG RVGI+YSYND VV+  RKMSSFG V
Sbjct:  209 PSNPLGTTLDRNTLESLVEFINQKNIHLVCDEIYAATVFSSPT-FTCISEVI-QNMNCNPNLIHIVYSLSKDMGLPGLRVGIVYSYNDDVVNIGRKMSSFGLV 309          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A1C_DIACA (1-aminocyclopropane-1-carboxylate synthase OS=Dianthus caryophyllus GN=ACS2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.666e-34
Identity = 70/103 (67.96%), Postives = 85/103 (82.52%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT LD++TLK +++F+N KNIHLVCDEIYA TVF   S F+S+AE+I      N++L+HI+YSLSKDMG PGFRVGIIYSYND+VVS AR+MSSFG V
Sbjct:  208 PSNPLGTVLDKDTLKMLLTFVNAKNIHLVCDEIYATTVFNSPS-FISVAEVIKDMPHVNQDLVHILYSLSKDMGMPGFRVGIIYSYNDRVVSTARRMSSFGLV 309          
BLAST of FC919311 vs. ExPASy Swiss-Prot
Match: 1A12_CUCPE (1-aminocyclopropane-1-carboxylate synthase 2 OS=Cucurbita pepo GN=ACS2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.393e-33
Identity = 70/103 (67.96%), Postives = 84/103 (81.55%), Query Frame = 1
Query:    1 P*NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGFV 309
            P NPLGT  DR+TLK +V+F+N+ +IHL+CDEIY+ATVF K  +F SIAEI++Q   C + LIHI+YSLSKDMG PGFRVGIIYSYND VV  AR+MSSFG V
Sbjct:  210 PSNPLGTTYDRDTLKTLVTFVNQHDIHLICDEIYSATVF-KAPTFTSIAEIVEQMEHCKKELIHILYSLSKDMGLPGFRVGIIYSYNDVVVRRARQMSSFGLV 311          
The following BLAST results are available for this feature:
BLAST of FC919311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
1A1C_PHAAU7.626e-4076.191-aminocyclopropane-1-carboxylate synthase (Fragme... [more]
1A1C_SOYBN4.185e-3875.241-aminocyclopropane-1-carboxylate synthase OS=Glyc... [more]
1A11_ARATH1.590e-3775.251-aminocyclopropane-1-carboxylate synthase-like pr... [more]
1A1C_TOBAC1.346e-3671.151-aminocyclopropane-1-carboxylate synthase OS=Nico... [more]
1A14_SOLLC1.346e-3672.821-aminocyclopropane-1-carboxylate synthase 4 OS=So... [more]
1A12_SOLLC2.999e-3671.431-aminocyclopropane-1-carboxylate synthase 2 OS=So... [more]
1A16_ARATH1.260e-3468.931-aminocyclopropane-1-carboxylate synthase 6 OS=Ar... [more]
1A11_PRUMU1.646e-3470.871-aminocyclopropane-1-carboxylate synthase 1 OS=Pr... [more]
1A1C_DIACA3.666e-3467.961-aminocyclopropane-1-carboxylate synthase OS=Dian... [more]
1A12_CUCPE1.393e-3367.961-aminocyclopropane-1-carboxylate synthase 2 OS=Cu... [more]

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Properties
Property NameValue
Genbank descriptionC06055B01T7 PCR Citrus clementina cDNA clone C06055B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919311 ID=FC919311; Name=FC919311; organism=Citrus clementina; type=EST; length=310bp
CCTTAGAACCCACTGGGCACTTTCTTAGACCGAGAAACCCTAAAAGATAT
AGTGAGCTTCATCAATGAAAAGAACATCCATTTAGTCTGTGATGAGATTT
ATGCTGCCACAGTGTTCACCAAGGAGTCTAGTTTCGTTAGCATCGCGGAG
ATAATAGACCAAGACATTGCATGCAATCGCAATCTCATTCACATTGTATA
CAGTCTTTCTAAGGACATGGGATTCCCTGGCTTTAGGGTCGGTATCATTT
ACTCGTACAATGATCAAGTAGTGAGCTGTGCTCGCAAAATGTCAAGTTTT
GGCTTCGTTT
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