FC919312

Overview
NameFC919312
Unique NameFC919312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length304
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig504 contig Ccv1_Contig504:281..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A11_PRUMU (1-aminocyclopropane-1-carboxylate synthase 1 OS=Prunus mume GN=ACS1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.811e-42
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTTLDR+TL+SLV FIN KNIHLVCDEIYAATVFSSP FT ++EVIQ M+CN +LIHI+YSLSKDMGLPG RVGIVYS+ND VVN GRKMSSFG V
Sbjct:  209 PSNPLGTTLDRNTLESLVEFINQKNIHLVCDEIYAATVFSSPTFTCISEVIQNMNCNPNLIHIVYSLSKDMGLPGLRVGIVYSYNDDVVNIGRKMSSFGLV 309          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A12_SOLLC (1-aminocyclopropane-1-carboxylate synthase 2 OS=Solanum lycopersicum GN=ACS2 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 6.947e-41
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD---CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTTLD+DTLKS++SF N  NIHLVCDEIYAATVF +P+F S+AE++ E +   CN+DL+HI+YSLSKDMGLPGFRVGI+YSFND VVNC RKMSSFG V
Sbjct:  207 PSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLV 310          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A1C_TOBAC (1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.548e-40
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE--MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTTLDRDTLK+L++F N  NIHLVCDEIYAATVF++P+F S+AE++ +    CN+DL+HI+YSLSKDMGLPGFRVGIVYSFND VVNC RKMSSFG V
Sbjct:  208 PSNPLGTTLDRDTLKNLLTFTNQHNIHLVCDEIYAATVFNTPQFVSIAEILDDETSHCNKDLVHIVYSLSKDMGLPGFRVGIVYSFNDAVVNCARKMSSFGLV 310          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A11_ARATH (1-aminocyclopropane-1-carboxylate synthase-like protein 1 OS=Arabidopsis thaliana GN=ACS1 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.640e-40
Identity = 80/100 (80.00%), Postives = 90/100 (90.00%), Query Frame = 1
Query:    7 NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM-DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            NPLGT+LDR+TL+SLVSFINDK IHLVCDEIYAATVF+ P F SVAE+IQEM   NRDLIHI+YSLSKDMGLPGFRVG+VYS+ND VV+C R+MSSFG V
Sbjct:  206 NPLGTSLDRETLESLVSFINDKQIHLVCDEIYAATVFAEPGFISVAEIIQEMYYVNRDLIHIVYSLSKDMGLPGFRVGVVYSYNDVVVSCARRMSSFGLV 305          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A14_SOLLC (1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.502e-39
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC-NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGT LDRDTLK + +F N+ NIHLVCDEIYAATVF+SPKF S+AE+I E +C N+DL+HI+ SLSKD+G PGFRVGIVYSFND VVNC RKMSSFG V
Sbjct:  213 PCNPLGTILDRDTLKKISTFTNEHNIHLVCDEIYAATVFNSPKFVSIAEIINEDNCINKDLVHIVSSLSKDLGFPGFRVGIVYSFNDDVVNCARKMSSFGLV 314          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A1C_PHAAU (1-aminocyclopropane-1-carboxylate synthase (Fragment) OS=Phaseolus aureus GN=ACS5 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.471e-38
Identity = 72/104 (69.23%), Postives = 90/104 (86.54%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE---MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGT +DR TL+++VSFIN+K IHLVCDEIYAATVFS P F S+AE++++   ++C+R+L+HI+YSLSKDMG PGFRVGI+YS+ND VVNC RKMSSFG V
Sbjct:  159 PSNPLGTIMDRKTLRTVVSFINEKRIHLVCDEIYAATVFSQPGFISIAEILEDETDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLV 262          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A16_ARATH (1-aminocyclopropane-1-carboxylate synthase 6 OS=Arabidopsis thaliana GN=ACS6 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.601e-37
Identity = 77/102 (75.49%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM-DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTTLDR+ LKSLV+F NDK IHL+ DEIYAAT F   +F SVAEVI+E+ DCNRDLIHI+YSLSKDMGLPG RVGIVYS+ND VV   RKMSSFG V
Sbjct:  211 PSNPLGTTLDRECLKSLVNFTNDKGIHLIADEIYAATTFGQSEFISVAEVIEEIEDCNRDLIHIVYSLSKDMGLPGLRVGIVYSYNDRVVQIARKMSSFGLV 312          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A12_CUCPE (1-aminocyclopropane-1-carboxylate synthase 2 OS=Cucurbita pepo GN=ACS2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.732e-37
Identity = 70/102 (68.63%), Postives = 89/102 (87.25%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD-CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTT DRDTLK+LV+F+N  +IHL+CDEIY+ATVF +P FTS+AE++++M+ C ++LIHI+YSLSKDMGLPGFRVGI+YS+ND VV   R+MSSFG V
Sbjct:  210 PSNPLGTTYDRDTLKTLVTFVNQHDIHLICDEIYSATVFKAPTFTSIAEIVEQMEHCKKELIHILYSLSKDMGLPGFRVGIIYSYNDVVVRRARQMSSFGLV 311          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A11_CUCPE (1-aminocyclopropane-1-carboxylate synthase 1 OS=Cucurbita pepo GN=ACC1A PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.732e-37
Identity = 70/102 (68.63%), Postives = 89/102 (87.25%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD-CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTT DRDTLK+LV+F+N  +IHL+CDEIY+ATVF +P FTS+AE++++M+ C ++LIHI+YSLSKDMGLPGFRVGI+YS+ND VV   R+MSSFG V
Sbjct:  210 PSNPLGTTYDRDTLKTLVTFVNQHDIHLICDEIYSATVFKAPTFTSIAEIVEQMEHCKKELIHILYSLSKDMGLPGFRVGIIYSYNDVVVRRARQMSSFGLV 311          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A1C_DIACA (1-aminocyclopropane-1-carboxylate synthase OS=Dianthus caryophyllus GN=ACS2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.660e-37
Identity = 73/102 (71.57%), Postives = 88/102 (86.27%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM-DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGT LD+DTLK L++F+N KNIHLVCDEIYA TVF+SP F SVAEVI++M   N+DL+HI+YSLSKDMG+PGFRVGI+YS+ND VV+  R+MSSFG V
Sbjct:  208 PSNPLGTVLDKDTLKMLLTFVNAKNIHLVCDEIYATTVFNSPSFISVAEVIKDMPHVNQDLVHILYSLSKDMGMPGFRVGIIYSYNDRVVSTARRMSSFGLV 309          
The following BLAST results are available for this feature:
BLAST of FC919312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
1A11_PRUMU4.811e-4281.191-aminocyclopropane-1-carboxylate synthase 1 OS=Pr... [more]
1A12_SOLLC6.947e-4174.041-aminocyclopropane-1-carboxylate synthase 2 OS=So... [more]
1A1C_TOBAC1.548e-4074.761-aminocyclopropane-1-carboxylate synthase OS=Nico... [more]
1A11_ARATH2.640e-4080.001-aminocyclopropane-1-carboxylate synthase-like pr... [more]
1A14_SOLLC6.502e-3974.511-aminocyclopropane-1-carboxylate synthase 4 OS=So... [more]
1A1C_PHAAU2.471e-3869.231-aminocyclopropane-1-carboxylate synthase (Fragme... [more]
1A16_ARATH1.601e-3775.491-aminocyclopropane-1-carboxylate synthase 6 OS=Ar... [more]
1A12_CUCPE2.732e-3768.631-aminocyclopropane-1-carboxylate synthase 2 OS=Cu... [more]
1A11_CUCPE2.732e-3768.631-aminocyclopropane-1-carboxylate synthase 1 OS=Cu... [more]
1A1C_DIACA4.660e-3771.571-aminocyclopropane-1-carboxylate synthase OS=Dian... [more]

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Properties
Property NameValue
Genbank descriptionC06055B02T7 PCR Citrus clementina cDNA clone C06055B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919312 ID=FC919312; Name=FC919312; organism=Citrus clementina; type=EST; length=304bp
CCTTAGAATCCATTGGGCACAACTTTGGACAGAGACACACTTAAAAGCTT
AGTGAGCTTCATCAATGACAAGAACATTCACCTTGTATGCGACGAGATTT
ATGCGGCCACTGTCTTCAGCTCTCCTAAGTTCACGAGCGTTGCTGAAGTC
ATTCAAGAAATGGACTGCAATCGTGACCTCATTCATATCATTTACAGCTT
GTCTAAGGACATGGGGCTCCCTGGCTTTAGAGTTGGCATTGTGTACTCGT
TTAATGATACTGTTGTGAATTGCGGCCGCAAGATGTCAAGTTTCGGCTTC
GTGT
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