FC919314

Overview
NameFC919314
Unique NameFC919314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length444
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 6.541e-51
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLAEASM 334
            DSEIIDATMKELA LFPDEISADQSKAKI+KYHVVKTPRSVYKT+P CEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY LL  R + +L+EAS+
Sbjct:  472 DSEIIDATMKELATLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLVGRSQKKLSEASV 582          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.116e-50
Identity = 96/111 (86.49%), Postives = 105/111 (94.59%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLAEASM 334
            DS+IIDATMKEL KLFPDEISADQSKAKI+KYHVVKTPRSVYKTIPNCEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGK C+Q+IVQDY LLAA G  +L+EA++
Sbjct:  453 DSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKFCSQSIVQDYELLAASGPRKLSEATV 563          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.903e-50
Identity = 98/111 (88.29%), Postives = 103/111 (92.79%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLAEASM 334
            DSEIIDATMKELAKLFPDEISADQSKAKI+KYHVVKTPRSVYKT+P CEPCR LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY LL  R + +LAE S+
Sbjct:  471 DSEIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLVGRSQRKLAETSV 581          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 5.537e-50
Identity = 95/111 (85.59%), Postives = 104/111 (93.69%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLAEASM 334
            D +II ATM ELAKLFPDEISADQSKAKI+KYHVVKTPRSVYKT+PNCEPCRP+QRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD  LLA RG+ R+A+AS+
Sbjct:  459 DDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLATRGQKRMAKASV 569          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 3.038e-48
Identity = 91/106 (85.85%), Postives = 100/106 (94.34%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRL 319
            D+EIIDATM+ELAKLFPDEI+ADQSKAKI+KYH+VKTPRSVYKT+PNCEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQ+IVQDY  LA R +  L
Sbjct:  457 DTEIIDATMEELAKLFPDEIAADQSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYSRLALRSQKSL 562          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: CRTI_NARPS (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.155e-47
Identity = 91/103 (88.35%), Postives = 97/103 (94.17%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGK 310
            DSEII+ TMKELAKLFPDEI+ADQSKAKI+KYHVVKTPRSVYKTIP+CEPCRPLQRSP+EGFYLAGDYT QKYLASMEGAVLSGKLCAQ+IVQDY LL  R K
Sbjct:  458 DSEIIERTMKELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTNQKYLASMEGAVLSGKLCAQSIVQDYELLVRRSK 560          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 7.484e-47
Identity = 87/101 (86.14%), Postives = 99/101 (98.02%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 304
            D+EII+ATM+ELAKLFPDEI+ADQSKAKI+KYHVVKTPRSVYKTIP+CEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQ++V+DY +L+ R
Sbjct:  465 DTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRR 565          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 7.484e-47
Identity = 87/101 (86.14%), Postives = 99/101 (98.02%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 304
            D+EII+ATM+ELAKLFPDEI+ADQSKAKI+KYHVVKTPRSVYKTIP+CEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQ++V+DY +L+ R
Sbjct:  465 DTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRR 565          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: CRTI_SYNY3 (Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=pds PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 3.269e-26
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 286
            D EI+ ATM E+ +LFP   + D + A+++K HVVKTPRSVYK  P  + CRP QR+ V  FYLAGD+T QKYL SMEGAVLSGK CAQAI  D+
Sbjct:  364 DEEIVAATMAEIKQLFPQHFNGD-NPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTMQKYLGSMEGAVLSGKQCAQAIAADF 457          
BLAST of FC919314 vs. ExPASy Swiss-Prot
Match: CRTI_SYNE7 (Phytoene dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.902e-24
Identity = 59/110 (53.64%), Postives = 72/110 (65.45%), Query Frame = 2
Query:    2 DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLAEAS 331
            D +I+ ATM E+ KLFP   S + + A++ KY +VKTP SVYK  P  +  RP Q SP+  F+L GDYT Q+YLASMEGAVLSGKL AQAI+     L  R  GR   AS
Sbjct:  364 DEDILAATMAEIEKLFPQHFSGE-NPARLRKYKIVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIIARQDELQRRSSGRPLAAS 472          
The following BLAST results are available for this feature:
BLAST of FC919314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CRTI_SOLLC6.541e-5187.39Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ARATH1.116e-5086.49Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_CAPAN1.903e-5088.29Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SOYBN5.537e-5085.59Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_MAIZE3.038e-4885.85Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_NARPS1.155e-4788.35Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSJ7.484e-4786.14Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSI7.484e-4786.14Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SYNY33.269e-2661.05Phytoene dehydrogenase OS=Synechocystis sp. (strai... [more]
CRTI_SYNE78.902e-2453.64Phytoene dehydrogenase OS=Synechococcus elongatus ... [more]

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Properties
Property NameValue
Genbank descriptionC06055B05T7 PCR Citrus clementina cDNA clone C06055B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919314 ID=FC919314; Name=FC919314; organism=Citrus clementina; type=EST; length=444bp
TGACTCAGAAATCATTGATGCTACAATGAAGGAGCTTGCAAAACTATTTC
CTGATGAAATTTCTGCTGATCAGAGCAAAGCAAAGATTGTGAAGTACCAT
GTCGTCAAAACGCCAAGGTCTGTATATAAAACCATCCCAAATTGTGAACC
TTGCCGTCCCTTACAAAGGTCTCCTGTAGAAGGGTTTTATTTAGCCGGGG
ATTACACAAAACAGAAGTATTTGGCTTCAATGGAAGGTGCTGTTTTGTCA
GGGAAGCTTTGTGCACAAGCAATTGTACAGGACTATGTGCTGCTTGCTGC
ACGGGGGAAAGGGAGATTGGCTGAGGCAAGCATGTGTCCATAAGCTGGAG
GCAGGGTTTATAATTGGAGCTTGAATGTCAAAGGTAATTATTAAACAATA
TAGATATGATTTGTCAACTCGATTAAAAGAAAAAAAAAAAAAAA
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