FC919315

Overview
NameFC919315
Unique NameFC919315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length198
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15097 contig Ccv1_Contig15097:466..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC919315 vs. ExPASy Swiss-Prot
Match: AOX4_ARATH (Alternative oxidase 4, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=AOX4 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.730e-31
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = -3 
Query:    8 TFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 196
            TFGWWRRADYLKVHFAESWNEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++SPR
Sbjct:  155 TFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPR 217
The following BLAST results are available for this feature:
BLAST of FC919315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AOX4_ARATH1.730e-3188.89Alternative oxidase 4, chloroplastic/chromoplastic... [more]
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Properties
Property NameValue
Genbank descriptionC06055B08T7 PCR Citrus clementina cDNA clone C06055B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919315 ID=FC919315; Name=FC919315; organism=Citrus clementina; type=EST; length=198bp
TATGCCTTCTTGGGCTTATTACATACATGAAGACTGTCACAAAATAATAA
GCAACGGCTATATGTTGCGCAAGAAAGCGATCGAACCACCAAGCATTTCC
TCCCAATTCTTCCATTATGAGCAAGTGATGCATCTCATTCCAGCTCTCAG
CAAAATGAACTTTCAGGTAATCTGCTCTTCTCCACCAACCAAAGGTCT
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