FC919321

Overview
NameFC919321
Unique NameFC919321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length482
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.805e-59
Identity = 106/133 (79.70%), Postives = 117/133 (87.97%), Query Frame = -3
Query:    1 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWXXAPDCF 399
            G+LKTVGR DF GQL+STMIAHPKVDP +G+LFA SYDVV KPYLKYF+FSP G KSPDV I L++PTMMHDFAITENFVVVPDQQVVFK  EMIRGGSPV+YDKNKV+RFGILDK A D+S +KW  APDCF
Sbjct:  276 GDLKTVGRFDFDGQLESTMIAHPKVDPESGELFALSYDVVSKPYLKYFRFSPDGTKSPDVEIQLDQPTMMHDFAITENFVVVPDQQVVFKLPEMIRGGSPVVYDKNKVARFGILDKYAEDSSNIKWIDAPDCF 408          

HSP 2 Score: 25.7942 bits (55), Expect = 6.805e-59
Identity = 13/29 (44.83%), Postives = 15/29 (51.72%), Query Frame = -1
Query:  396 NAVFXYFNNCLLAMXXXXXXXXVGVTPSG 482
            NA   YFN  LLAM        V +TP+G
Sbjct:  248 NAGLVYFNGRLLAMSEDDLPYQVQITPNG 276          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.966e-58
Identity = 106/135 (78.52%), Postives = 117/135 (86.67%), Query Frame = -3
Query:    1 SIGELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWXXAPDCF 405
            S G+L TVGR DF+GQL STMIAHPK+DPV GDL A SYDVV+KPYLKYF+FS  G+KSPDV IPL+EPTMMHDFAITENFVVVPDQQVVFK  EMI GGSPV+YDKNK SRFGILDKNA DA+ M+W  AP+CF
Sbjct:  293 SNGDLTTVGRYDFNGQLNSTMIAHPKLDPVNGDLHALSYDVVQKPYLKYFRFSADGVKSPDVEIPLKEPTMMHDFAITENFVVVPDQQVVFKLTEMITGGSPVVYDKNKTSRFGILDKNAKDANAMRWIDAPECF 427          

HSP 2 Score: 25.0238 bits (53), Expect = 1.966e-58
Identity = 13/29 (44.83%), Postives = 15/29 (51.72%), Query Frame = -1
Query:  396 NAVFXYFNNCLLAMXXXXXXXXVGVTPSG 482
            NA   YFNN LLAM        V +T +G
Sbjct:  267 NAGLVYFNNHLLAMSEDDLPYHVRITSNG 295          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.039e-53
Identity = 97/133 (72.93%), Postives = 113/133 (84.96%), Query Frame = -3
Query:    1 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWXXAPDCF 399
            G+L+T GR DF GQLKSTMIAHPK+DP T +LFA SYDVV KPYLKYF+F+  G KSPDV IPL++PTM+HDFAITENFVV+PDQQVVF+  EMIRGGSPV+YD+ K SRFGIL+KNA DAS ++W   PDCF
Sbjct:  336 GDLETSGRYDFDGQLKSTMIAHPKIDPETRELFALSYDVVSKPYLKYFRFTSDGEKSPDVEIPLDQPTMIHDFAITENFVVIPDQQVVFRLPEMIRGGSPVVYDEKKKSRFGILNKNAKDASSIQWIEVPDCF 468          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.165e-51
Identity = 95/133 (71.43%), Postives = 109/133 (81.95%), Query Frame = -3
Query:    1 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWXXAPDCF 399
            G+L+T+GR DF GQL S MIAHPK+DPVT +LFA SYDVVKKPYLKYF+FSP+G KSPDV IPL  PTMMHDFAITENFVV+PDQQVVFK  +M  G SPV YD  K+SRFGIL +NA DAS+M W  +P+ F
Sbjct:  266 GDLETIGRFDFDGQLSSAMIAHPKIDPVTKELFALSYDVVKKPYLKYFKFSPEGEKSPDVEIPLASPTMMHDFAITENFVVIPDQQVVFKLSDMFLGKSPVKYDGEKISRFGILPRNAKDASEMVWVESPETF 398          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 2.828e-51
Identity = 93/133 (69.92%), Postives = 107/133 (80.45%), Query Frame = -3
Query:    1 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWXXAPDCF 399
            G+L+TVGR DF GQL   MIAHPK+DP TG+L A SYDV+K+PYLKYF F P G KS DV IPLE+PTM+HDFAITEN VVVPD QVVFK +EM+RGGSPV+ DK K SRFG+L K+A DAS+M W   PDCF
Sbjct:  277 GDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDKEKTSRFGVLPKHAADASEMAWVDVPDCF 409          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.734e-50
Identity = 93/133 (69.92%), Postives = 112/133 (84.21%), Query Frame = -3
Query:    1 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWXXAPDCF 399
            G+L+TVGR DF GQLKS MIAHPK+DPVT +L A SYDVVKKPYLKYF+FSP G+KSP++ IPLE PTM+HDFAITENFVV+PDQQVVFK  EMI G SPV++D  KVSR GI+ K+AT+AS++ W  +P+ F
Sbjct:  259 GDLQTVGRYDFDGQLKSAMIAHPKLDPVTKELHALSYDVVKKPYLKYFRFSPDGVKSPELEIPLETPTMIHDFAITENFVVIPDQQVVFKLGEMISGKSPVVFDGEKVSRLGIMPKDATEASQIIWVNSPETF 391          

HSP 2 Score: 23.8682 bits (50), Expect = 1.734e-50
Identity = 12/29 (41.38%), Postives = 15/29 (51.72%), Query Frame = -1
Query:  396 NAVFXYFNNCLLAMXXXXXXXXVGVTPSG 482
            NA   YFNN LLAM        + +T +G
Sbjct:  231 NAGLVYFNNRLLAMSEDDLPYQLKITQTG 259          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.134e-42
Identity = 80/133 (60.15%), Postives = 100/133 (75.19%), Query Frame = -3
Query:    1 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWXXAPDCF 399
            G+L+T+GR  F  Q+ S++IAHPKVD  TGDL   SY+V+KKP+L+Y +F+  G K+ DV I L EPTM+HDFAITENFVV+PDQQ+VFK  EMIRGGSPVIY K K++RFG+L K     S + W   PDCF
Sbjct:  255 GDLETIGRFGFDDQIDSSVIAHPKVDATTGDLHTLSYNVLKKPHLRYLKFNTCGKKTRDVEITLPEPTMIHDFAITENFVVIPDQQMVFKLSEMIRGGSPVIYVKEKMARFGVLSKQDLTGSDINWVDVPDCF 387          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.027e-24
Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = -3
Query:    1 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVI-YDKNKVSRFGILDKNATDASKMKWXXAPDCF 399
            G+L+T+G  D+  +L  +  AHPKVDP TG++F+  Y     PY+ Y   S  G     V I + +P MMHDFAITEN+ V  D  ++F+ KEM++  + +  +D  K +RFG+L + A D   ++W   P+CF
Sbjct:  203 GDLQTLGMLDYDKRLGHSFTAHPKVDPFTGEMFSFGY-AHTPPYITYRVISKDGYMHDPVPITISDPIMMHDFAITENYAVFMDLPLIFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDEQHIRWFELPNCF 335          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.910e-23
Identity = 60/132 (45.45%), Postives = 84/132 (63.64%), Query Frame = -3
Query:   10 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKS-PDVXI-PLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWXXAP 399
            G++ TVGR + +   KST  AHPK DPVTG+ F+ SY  ++ PY+ Y ++   G KS PDV I   +EP+ +HDFAITE++ V PD Q+V K  E++RG   +  D  KV R G+L + AT  S+M+W   P
Sbjct:   42 GDISTVGRIENNVSTKSTT-AHPKTDPVTGETFSFSYGPIQ-PYVTYSRYDCDGKKSGPDVPIFSFKEPSFVHDFAITEHYAVFPDIQIVMKPAEIVRGRRMIGPDLEKVPRLGLLPRYATSDSEMRWFDVP 171          
BLAST of FC919321 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.910e-23
Identity = 55/134 (41.04%), Postives = 78/134 (58.21%), Query Frame = -3
Query:    1 GELKTVGRXDFSGQLKSTMIAHPKVDPVTGDLFAQSYDVVKKPYLKYFQFSPQGIKSPDVXIPLEEPTMMHDFAITENFVVVPDQQVVFKXKEMIRGGSPVI-YDKNKVSRFGILDKNATDASKMKWXXAPDCF 399
            G+L+T+G  D+  +L  +  AHPKVDPVTG++F   Y     PYL Y   S  GI    V I + EP MMHDFAITE + +  D  + F+ KEM++    +  +D  K +RFG+L + A D   ++W   P+CF
Sbjct:  201 GDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTP-PYLTYRVISKDGIMHDPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCF 333          
The following BLAST results are available for this feature:
BLAST of FC919321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NCED3_ARATH6.805e-5979.709-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED1_PHAVU1.966e-5878.529-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED9_ARATH1.039e-5372.939-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED5_ARATH2.165e-5171.43Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED1_MAIZE2.828e-5169.929-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED2_ARATH1.734e-5069.929-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED6_ARATH3.134e-4260.159-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD1_PHAVU5.027e-2439.55Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
ZCD_CROSA1.910e-2345.45Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
CCD1_ARATH1.910e-2341.04Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06055C02T7 PCR Citrus clementina cDNA clone C06055C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919321 ID=FC919321; Name=FC919321; organism=Citrus clementina; type=EST; length=482bp
GAAGCAATCAGGGGCGTNANTCCACTTCATTTTGGAAGCATCGGTGGCAT
TCTTGTCCAAAATCCCAAATCTTGACACCTTGTTCTTGTCATAAATCACA
GGGGAGCCACCTCGGATCATCTCTTTNAACTTGAACACCACTTGCTGGTC
AGGCACCACAACAAAATTCTCAGTGATTGCGAAATCATGCATCATTGTAG
GCTCCTCAAGGGGAATNTCAACGTCCGGAGACTTGATCCCTTGGGGCGAA
AACTGAAAGTACTTCAAGTAAGGCTTCTTGACAACGTCATAACTCTGAGC
AAACAAATCACCCGTCACGGGATCAACTTTCGGATGAGCTATCATCGTGG
ACTTGAGCTGGCCGCTGAAGTCNAAACGGCCGACTGTTTTTAGCTCCCCG
ATGGAGTGACGCCCACNTGATAAAGCAAGTCATCTTNATACATGGCCAAC
AAACAGTTGTTGAAGTAAANAAAGACGGCGTT
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