FC919325

Overview
NameFC919325
Unique NameFC919325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919325 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.999e-64
Identity = 125/170 (73.53%), Postives = 140/170 (82.35%), Query Frame = -1
Query:  126 MTPADSISTS*RESEECFI-RXRLHLKTGESTRRQILSESDQVNXEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA 632
            MTPADSI     ES +  +   RL+L+TG+STRR I+S+++QVN EAGMVNRN LGRKTQFAYLA+AEPWPKVSGFAKVDL SGEV+KY YG+ K+GGEP FLP    N E E DGYILAFVHDEK WKSELQIVNA NL+LEASIKLPSRVPYGFHGTF+ SKDL  QA
Sbjct:  450 MTPADSIFNECDESLKSVLSEIRLNLRTGKSTRRPIISDAEQVNLEAGMVNRNKLGRKTQFAYLALAEPWPKVSGFAKVDLFSGEVQKYMYGEEKFGGEPLFLP----NGEEEGDGYILAFVHDEKEWKSELQIVNAQNLKLEASIKLPSRVPYGFHGTFIHSKDLRKQA 615          
BLAST of FC919325 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.213e-61
Identity = 118/170 (69.41%), Postives = 140/170 (82.35%), Query Frame = -1
Query:  126 MTPADSISTS*RESEECFI-RXRLHLKTGESTRRQILSESDQVNXEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA 632
            MTPADSI     E     +   RL+LKTG+STRR I+  S Q+N EAGMVNRN LGRKT++AYLAIAEPWPKVSGFAKVDLS+GEVK +FYG  KYGGEPFFLPR    S+ EDDGYI++FVHDE++W+SEL IVNA+ L+LEA++KLPSRVPYGFHGTFV+S D++NQA
Sbjct:  421 MTPADSIFNECDEQLNSVLSEIRLNLKTGKSTRRTIIPGSVQMNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGEVKNHFYGGKKYGGEPFFLPRGL-ESDGEDDGYIMSFVHDEESWESELHIVNAVTLELEATVKLPSRVPYGFHGTFVNSADMLNQA 589          
BLAST of FC919325 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.027e-60
Identity = 117/170 (68.82%), Postives = 138/170 (81.18%), Query Frame = -1
Query:  129 MTPADSISTS*RESEECFI-RXRLHLKTGESTRRQILSESDQ-VNXEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQ 632
            MTP DSI     E+ +  +   RL+LKTGESTRR I+S  DQ VN EAGMVNRN LGRKT+FAYLA+AEPWPKVSGFAKVDL++GEVKK+ YGDN+YGGEP FLP +      ED+GYIL FVHDEKTWKSELQIVNA++L++EA++KLPSRVPYGFHGTF+ + DL  Q
Sbjct:  431 MTPPDSIFNESDENLKSVLSEIRLNLKTGESTRRPIISNEDQQVNLEAGMVNRNMLGRKTKFAYLALAEPWPKVSGFAKVDLTTGEVKKHLYGDNRYGGEPLFLPGEGG---EEDEGYILCFVHDEKTWKSELQIVNAVSLEVEATVKLPSRVPYGFHGTFIGADDLAKQ 597          
BLAST of FC919325 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.004e-56
Identity = 113/170 (66.47%), Postives = 132/170 (77.65%), Query Frame = -1
Query:  129 MTPADSISTS*RESEECFI-RXRLHLKTGESTRRQILSESDQVNXEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLP-RDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQ 632
            M+PADSI     ES    +   R++L+T ++TRR +L   D VN E GMVNRN LGRKT+FA+LAIA PWPKVSGFAKVDL +GE+KKY YG  KYGGEPFFLP    N  ENEDDGYI   VHDE+T  SELQI+NA+NL+LEA+IKLPSRVPYGFHGTFVDS +LV+Q
Sbjct:  414 MSPADSIFNERDESLRSVLSEIRINLRTRKTTRRSLLVNED-VNLEIGMVNRNRLGRKTRFAFLAIAYPWPKVSGFAKVDLCTGEMKKYIYGGEKYGGEPFFLPGNSGNGEENEDDGYIFCHVHDEETKTSELQIINAVNLKLEATIKLPSRVPYGFHGTFVDSNELVDQ 582          
BLAST of FC919325 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 108/170 (63.53%), Postives = 133/170 (78.24%), Query Frame = -1
Query:  126 MTPADSISTS*RESEECFI-RXRLHLKTGESTRRQILSESDQVNXEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA 632
            MTP DSI     E+ +  +   RL+LKTGESTRR ++SE  QVN EAGMVNRN LGRKT++AYLA+ EPWPKVSGFAKVDLS+GE++KY YG+ KYGGEP FLP   +    ED GYI+ FVHDE+  KSELQ++NA+N++LEA++ LPSRVPYGFHGTF+  +DL  QA
Sbjct:  491 MTPPDSIFNEHDETLQSVLSEIRLNLKTGESTRRPVISE--QVNLEAGMVNRNLLGRKTRYAYLALTEPWPKVSGFAKVDLSTGEIRKYIYGEGKYGGEPLFLP---SGDGEEDGGYIMVFVHDEEKVKSELQLINAVNMKLEATVTLPSRVPYGFHGTFISKEDLSKQA 655          
BLAST of FC919325 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 5.107e-52
Identity = 101/172 (58.72%), Postives = 129/172 (75.00%), Query Frame = -1
Query:  126 MTPADSI-STS*RESEECFIRXRLHLKTGESTRRQILSESDQVNXEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRD--ANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA 632
            MTPADSI + S    E      RL  +TG STRR +L  S QVN E GMVNRN LGR+T++AYLA+AEPWPKVSGFAKVDLS+GE+ K+ YG+ ++GGEP F+P D  A +   EDDGY+L FVHDE+   SEL +VNA +++LEA+++LPSRVP+GFHGTF+  ++L  QA
Sbjct:  432 MTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQA 603          
BLAST of FC919325 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.752e-36
Identity = 77/169 (45.56%), Postives = 112/169 (66.27%), Query Frame = -1
Query:  129 MTPADSI-STS*RESEECFIRXRLHLKTGESTRRQILSESDQVNXEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQ 632
            M+P D+I S S   +       RL+++T ES R+ I++    VN EAG +NR+ +GRK+QF Y+AIA+PWPK SG AKVD+ +G V ++ YG +++GGEP F+P        ED GY++ FV DE+  +SE  +V+A +++  A+++LP RVPYGFHGTFV    L  Q
Sbjct:  413 MSPPDTIFSESGEPTRVELSEIRLNMRTKESNRKVIVTG---VNLEAGHINRSYVGRKSQFVYIAIADPWPKCSGIAKVDIQNGTVSEFNYGPSRFGGEPCFVP---EGEGEEDKGYVMGFVRDEEKDESEFVVVDATDMKQVAAVRLPERVPYGFHGTFVSENQLKEQ 575          
BLAST of FC919325 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 65/154 (42.21%), Postives = 95/154 (61.69%), Query Frame = -1
Query:  138 RXRLHLKTGESTRRQILSESDQVNXEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGE-----VKKYFYGDNKYGGEPFFLPRDANNSE-NEDDGYILAFVHDEKTWKSELQIVNAMNLQLE--ASIKLPSRVPYGFHGTFVDSKDL 575
            + ++ L TG   R  I +     N +  ++N   LGR +++ Y AI +P PK+SG  K+D+S G+     V +  YG   YGGEPFF+ RD  N E  EDDGY++ +VHDE T +S+  +++A + +LE  A+++LP RVPYGFHG FV   DL
Sbjct:  443 KVKIDLVTGIVRRHPISAR----NLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKGDRDDCTVARRMYGSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKESDL 592          
BLAST of FC919325 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.022e-24
Identity = 61/155 (39.35%), Postives = 96/155 (61.94%), Query Frame = -1
Query:  129 RLHLKTGESTRRQILSESDQVNXEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDL---SSGE--VKKYFYGDNKYGGEPFFLPRDANNS-ENEDDGYILAFVHDEKTWKSELQIVNAMNLQLE--ASIKLPSRVPYGFHGTFVDSKDLVNQ 569
            R+ LK+G  +R  + +E    N + G+++R   GRK+++AYL + +P PK+ G  KVD      GE  V +  +G   +GGEPFF+P  +  S   EDDGY+++++HDE   +S   +++A + +LE  A + LP RVPYGFHG FV   +L++Q
Sbjct:  218 RIELKSGSVSRTLLSAE----NLDFGVIHRGYSGRKSRYAYLGVGDPMPKIRGVVKVDFELAGRGECVVARREFGVGCFGGEPFFVPASSKKSGGEEDDGYVVSYLHDEGKGESSFVVMDARSPELEILAEVVLPRRVPYGFHGLFVTEAELLSQ 368          
BLAST of FC919325 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.558e-19
Identity = 55/159 (34.59%), Postives = 86/159 (54.09%), Query Frame = -1
Query:  138 RLHLKTGESTRRQILSESDQVNXEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSS------------GEVKKYF-YGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLE--ASIKLPSRVPYGFHGTFVDSKDL 569
            R ++KTG ++++Q+   +     +   +N +   RK ++ Y  I +   KV G  K DL +            G V+  F  G  +YG E  F+PR+      EDDGY++ FVHDE T KSE+ +++A  +  E  A ++LP+RVPYGFH  FV+ + L
Sbjct:  385 RFNMKTGAASQKQLSVSA----VDFPRINESYTTRKQRYVYGTILDNITKVKGIIKFDLHAEPEAGKKKLEVGGNVQGIFDLGPGRYGSEAVFVPRERGIKSEEDDGYLIFFVHDENTGKSEVNVIDAKTMSAEPVAVVELPNRVPYGFHAFFVNEEQL 539          
The following BLAST results are available for this feature:
BLAST of FC919325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NCED1_PHAVU1.999e-6473.539-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED5_ARATH1.213e-6169.41Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED3_ARATH1.027e-6068.829-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED2_ARATH2.004e-5666.479-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED9_ARATH9.944e-5663.539-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED1_MAIZE5.107e-5258.729-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED6_ARATH8.752e-3645.569-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD4_ARATH3.334e-2742.21Probable carotenoid cleavage dioxygenase 4, chloro... [more]
ZCD_CROSA2.022e-2439.35Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
CCD_CROSA2.558e-1934.59Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]

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Properties
Property NameValue
Genbank descriptionC06055C06T7 PCR Citrus clementina cDNA clone C06055C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919325 ID=FC919325; Name=FC919325; organism=Citrus clementina; type=EST; length=659bp
AGGAGAATCCGGGGACCTGTCCTCATCTAAAGCATACATCCCTCTGGTAA
AATTCTCCCTTGTAAATTCGTCTCTTCTCACAAAATTAACTTACTAACAA
GAAAAACCCTTCCCCATCGTGCTTATGCTTGATTCACCAAGTCCTTGGAG
TCAACAAAAGTTCCATGAAAACCGTATGGTACTCTCGAAGGTAACTTAAT
CGAAGCTTCAAGCTGTAAATTCATGGCATTCACAATTTGCAGCTCTGATT
TCCAAGTCTTCTCGTCATGAACAAATGCAAGAATATAACCATCGTCTTCA
TTTTCAGAATTATTAGCATCTCTTGGCAAGAAAAATGGCTCGCCGCCATA
TTTATTATCGCCGTAAAAATACTTTTTAACCTCTCCTGAAGAGAGATCCA
CTTTAGCAAAACCTGAGACTTTAGGCCATGGTTCCGCAATGGCTAGATAA
GCGAACTGAGTTTTTCTACCAAGGCTGTTGCGATTCACCATCCCAGCCTC
CANGTTCACTTGATCAGACTCCGAGAGAATCTGGCGGCGCGTGGACTCAC
CAGTCTTTAAATGGAGCCGANTTCGGATAAAACACTCTTCAGACTCTCGT
CAACTCGTTGAAATTGAGTCAGCAGGNGTCATGCTGATCCATGACACATT
TCATCAGTT
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