FC919327

Overview
NameFC919327
Unique NameFC919327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14092 contig Ccv1_Contig14092:1..566. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC919327 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.854e-14
Identity = 35/109 (32.11%), Postives = 49/109 (44.95%), Query Frame = 1 
Query:  154 FSSSLVDKGFPTKSIAL-KXKPNK-SLKVESALHSPSVLHFPKQPYPNPVITXPDSTAKPDNKSNKSQGQTQQSQWNPLQRXXXXXXXXXXXXXVSRERQHPLPKTSRP 474
            F+ S +D   P+ S++    KP +  L   S   +P++L+FP  P PNP+I   D+                 S+WNPLQR             + RER  PLPKT  P
Sbjct:   18 FAPSDLDAPSPSSSVSFTNTKPRRRKLSANSVSDTPNLLNFPNYPSPNPIIPEKDT-----------------SRWNPLQRAASAALDFAETALLRRERSKPLPKTVDP 109

HSP 2 Score: 44.2838 bits (103), Expect = 2.854e-14
Identity = 20/36 (55.56%), Postives = 23/36 (63.89%), Query Frame = 2 
Query:  458 PKQADPRVQIGGNFAPVPERPVXHGLPVTGSIPXMV 565
            PK  DPR QI GN+APVPE+ V   L V G IP  +
Sbjct:  104 PKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCI 139
The following BLAST results are available for this feature:
BLAST of FC919327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NCED5_ARATH2.854e-1432.11Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
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Properties
Property NameValue
Genbank descriptionC06055C08T7 PCR Citrus clementina cDNA clone C06055C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919327 ID=FC919327; Name=FC919327; organism=Citrus clementina; type=EST; length=567bp
CTCTCCCTGCTCTCTTCCTCTGCTCTTTCTCTATAGTCTAAACAATACAC
CAAACACAAAACTTTNTCCCCAGTCTTGTGCCATATAGCCATGGCTGCTT
CTACTACATCACCCAACTCTTGTAGTTGGGGTAAATCTCAAATTCTTAAC
CCATTCTCTTCATCTTTGGTTGACAAGGGCTTCCCAACGAAGTCCATAGC
CTTGAAGAANAAGCCCAACAAATCCTTGAAAGTAGAATCTGCCTTACACT
CTCCTTCAGTCCTTCATTTCCCTAAACAGCCTTACCCGAATCCTGTAATT
ACCANACCGGACTCTACAGCAAAACCTGACAACAAGAGCAACAAAAGCCA
AGGACAAACACAGCAATCACAATGGAATCCCCTCCAAAGAGCCGCTGCCA
TGGCCTTGGACATGGCGGAGAACGCGTTGGTCTCACGAGAGCGCCAACAC
CCACTTCCCAAAACAAGCCGACCCACGTGTCCAAATTGGCGGTAACTTCG
CTCCNGTGCCGGAACGGCCCGTCCNGCATGGTCTGCCGGTCACTGGCTCC
ATCCCCGNAATGGTTTA
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