FC919329

Overview
NameFC919329
Unique NameFC919329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POLG_PVCV2 (Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.115e-48
Identity = 97/195 (49.74%), Postives = 127/195 (65.13%), Query Frame = -1
Query:   12 EINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 596
            E ++L    LI  S S W+C AFYVNK SE  RG  RLVINY+PLN  L+  ++PIPNK  L   L  A +FSKFD+KSGFWQ+ IHP +R KT F +P   ++W VMPFGLK APS FQ+ M  I+ P     +VYIDD+L+FS++++ H K L  F    +K G+ +S  K+ L Q KI+FLG   + GT +P
Sbjct: 1405 ECDELQQFDLIEPSDSQWACEAFYVNKRSEQVRGKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSP 1599          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POLG_PVCV1 (Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.115e-48
Identity = 97/195 (49.74%), Postives = 127/195 (65.13%), Query Frame = -1
Query:   12 EINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 596
            E ++L    LI  S S W+C AFYVNK SE  RG  RLVINY+PLN  L+  ++PIPNK  L   L  A +FSKFD+KSGFWQ+ IHP +R KT F +P   ++W VMPFGLK APS FQ+ M  I+ P     +VYIDD+L+FS++++ H K L  F    +K G+ +S  K+ L Q KI+FLG   + GT +P
Sbjct: 1404 ECDELQQFDLIEPSDSQWACEAFYVNKRSEQVRGKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSP 1598          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_CAMVS (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.411e-43
Identity = 89/204 (43.63%), Postives = 124/204 (60.78%), Query Frame = -1
Query:   12 MDLEKHCKDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 623
            MD E+  K +I +L++  +I  S+SP    AF VN  +E  RG  R+V+NYK +NK+     Y +PNK++LL  +    IFS FD KSGFWQ+ +  + R  TAFT P G YEW V+PFGLK APS FQR M++ +  +  FC VY+DD+L+FS + + H  H+        + G+ +S  K  LF+ KI FLG  I +GT  P
Sbjct:  257 MDREEFDK-QIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKP 459          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_CAMVE (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.843e-43
Identity = 89/204 (43.63%), Postives = 124/204 (60.78%), Query Frame = -1
Query:   12 MDLEKHCKDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 623
            MD E+  K +I +L++  +I  S+SP    AF VN  +E  RG  R+V+NYK +NK+     Y +PNK++LL  +    IFS FD KSGFWQ+ +  + R  TAFT P G YEW V+PFGLK APS FQR M++ +  +  FC VY+DD+L+FS + + H  H+        + G+ +S  K  LF+ KI FLG  I +GT  P
Sbjct:  257 MDREEFDK-QIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKP 459          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_CAMVC (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.843e-43
Identity = 89/204 (43.63%), Postives = 124/204 (60.78%), Query Frame = -1
Query:   12 MDLEKHCKDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 623
            MD E+  K +I +L++  +I  S+SP    AF VN  +E  RG  R+V+NYK +NK+     Y +PNK++LL  +    IFS FD KSGFWQ+ +  + R  TAFT P G YEW V+PFGLK APS FQR M++ +  +  FC VY+DD+L+FS + + H  H+        + G+ +S  K  LF+ KI FLG  I +GT  P
Sbjct:  257 MDREEFDK-QIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKP 459          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_CAMVN (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.105e-43
Identity = 88/204 (43.14%), Postives = 124/204 (60.78%), Query Frame = -1
Query:   12 MDLEKHCKDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 623
            MD E+  K +I +L++  +I  S+SP    AF VN  +E  RG  R+V+NYK +NK+     Y +PNK++LL  +    IFS FD KSGFWQ+ +  + R  TAFT P G YEW V+PFGLK APS FQR M++ +  +  FC VY+DD+++FS + + H  H+        + G+ +S  K  LF+ KI FLG  I +GT  P
Sbjct:  258 MDREEFDK-QIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKP 460          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_CAMVD (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.362e-43
Identity = 89/204 (43.63%), Postives = 123/204 (60.29%), Query Frame = -1
Query:   12 MDLEKHCKDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 623
            MD E+  K +I +L++  +I  S+SP    AF VN  +E  RG  R+V+NYK +NK+     Y  PNK++LL  +    IFS FD KSGFWQ+ +  + R  TAFT P G YEW V+PFGLK APS FQR M++ +  +  FC VY+DD+L+FS + + H  H+        + G+ +S  K  LF+ KI FLG  I +GT  P
Sbjct:  252 MDREEFDK-QIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKP 454          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_FMVD (Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.554e-41
Identity = 83/195 (42.56%), Postives = 116/195 (59.49%), Query Frame = -1
Query:   12 EINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 596
            +I +L++ GLI+ S+S     AF V   +E  RG  R+V+NYK +N++     + +PN  +LL  L    IFS FD KSGFWQ+ +  + +  TAFT P G ++W V+PFGLK APS FQR M    N    FC+VY+DD+++FS S   H+ H+        K G+ +S  K +LF+ KI FLG  I KGT  P
Sbjct:  258 QIKELLDLGLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCP 452          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_CERV (Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.366e-37
Identity = 80/197 (40.61%), Postives = 115/197 (58.38%), Query Frame = -1
Query:   12 EINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQR-IMNDIYNPYSDFCIVYIDDVLIFSKS-IDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 596
            +I +L+   +I  S+S     AF V   +E  RG  R+V+NYK +NK+ K   + +PNK++LL  +    I+S FD KSG WQ+ +  + +  TAFT P G Y+W V+PFGLK APS F +   N   N YS +C VY+DD+L+FS +   +H+ H+        K G+ +S  K  LF+ KI FLG  I +GT  P
Sbjct:  247 QIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCP 443          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_SOCMV (Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.279e-36
Identity = 79/189 (41.80%), Postives = 117/189 (61.90%), Query Frame = -1
Query:   42 KDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTV-PFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSK-SIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLG 602
            K+E  DL+ KGLI +S+SP S  AFYV  ++EI+RG  R+VINYK +N++     Y +P K+ +L+K+  +  FS  D KSG++Q+++H   +  TAF+  P   YEW V+ FGLK APS +QR M+         C+ YIDD+LIF+K S +QH   ++      ++ G+ IS  K  L Q +I +LG
Sbjct:  220 KEECEDLLKKGLIRESQSPHSAPAFYVENHNEIKRGKRRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKGLEHICLAYIDDILIFTKGSKEQHVNDVRIVLQRIKEKGIIISKKKSKLIQQEIEYLG 408          
The following BLAST results are available for this feature:
BLAST of FC919329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
POLG_PVCV21.115e-4849.74Genome polyprotein OS=Petunia vein clearing virus ... [more]
POLG_PVCV11.115e-4849.74Genome polyprotein OS=Petunia vein clearing virus ... [more]
POL_CAMVS1.411e-4343.63Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVE1.843e-4343.63Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVC1.843e-4343.63Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVN4.105e-4343.14Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVD5.362e-4343.63Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_FMVD6.554e-4142.56Enzymatic polyprotein OS=Figwort mosaic virus (str... [more]
POL_CERV3.366e-3740.61Enzymatic polyprotein OS=Carnation etched ring vir... [more]
POL_SOCMV1.279e-3641.80Enzymatic polyprotein OS=Soybean chlorotic mottle ... [more]

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Properties
Property NameValue
Genbank descriptionC16000A02SK PCR Citrus clementina cDNA clone C16000A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919329 ID=FC919329; Name=FC919329; organism=Citrus clementina; type=EST; length=638bp
TATCGCTCAATTGGAGTAATGGTTCCTTTTGAAATATGATGACCTAGGAA
CCGGATTTTTGTTTGAAATAAAGAGACTTTGGAATTTGAAATTGCCAATC
CAGCCTTTCTGGTGGCAAAATAAAAGGTCTTTAAATGTTTAAAATGTTGA
TCAATTGATTTTGAAAAAATCAACACGTCATCAATATAAACGATACAAAA
ATCGGAATAAGGATTGTAAATGTCATTCATAATTCTTTGAAATTCAGATG
GTGCATTTTTCAAACCAAATGGCATAACAGTCCACTCATACTGTCCAAAT
GGAACAGTAAAAGCGGTTTTATAACGGTCTTTTGGATGAATTTGAATTTG
CCAAAATCCTGATTTCATGTCAAATTTTGAAAATATGAAAGCAGAATGCA
ATTTTTGAAGCAAATCATTTTTATTAGGTATTGGGTACCTAATCCATTTT
AAAGATTTATTTAAAGGTTTGTAATTTATAACAAGTCTTGGTGTGCCTCT
CTCAATTTCGGAATTTTTATTAACATAAAAAGCGGCACATGACCAAGGTG
ACCTAGATTTTACAATAAGTCCTTTATTAACAAGATCATTAATTTCATCT
TTACAATGTTTCTCTAAATCCATATTCATTTGAATCGG
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