FC920221

Overview
NameFC920221
Unique NameFC920221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15341 contig Ccv1_Contig15341:2..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920221 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 8.657e-63
Identity = 118/144 (81.94%), Postives = 123/144 (85.42%), Query Frame = 1
Query:   79 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYK 510
            G KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI+TDYMTYMFKYDSVHGQWKH+ELKVKD KTLLFGEKPV VFG RNPEEIPW +TGAE+VVESTGVFT               V+ISAPSKDAPMFVVGVNE EYK
Sbjct:    2 GGKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYK 145          
BLAST of FC920221 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 1.131e-62
Identity = 116/145 (80.00%), Postives = 124/145 (85.52%), Query Frame = 1
Query:   82 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 516
            DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNELK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFT               VVISAPSKDAPMFVVGVNE EYK +
Sbjct:    3 DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 147          
BLAST of FC920221 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 1.633e-61
Identity = 115/145 (79.31%), Postives = 123/145 (84.83%), Query Frame = 1
Query:   82 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 516
            DKKIKIGINGFGRIGRLVARV LQR+DVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFT               VVISAPSKDAPMFVVGVNE EYK +
Sbjct:    3 DKKIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 147          
BLAST of FC920221 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 3.637e-61
Identity = 114/143 (79.72%), Postives = 121/143 (84.62%), Query Frame = 1
Query:   88 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 516
            KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS +YMTYMFKYDSVHGQWKH+ELK KD+KTLLFGEKPV VFG RNPEEIPW + GA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNEKEYK +
Sbjct:    3 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKSD 145          
BLAST of FC920221 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 6.204e-61
Identity = 117/142 (82.39%), Postives = 121/142 (85.21%), Query Frame = 1
Query:   91 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 516
            IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG WKH+ELKVKDEKTLLFGEKPV VFG RNPEEIP A TGAEY+VESTGVFT               V+ISAPSKDAPMFVVGVNEKEYK +
Sbjct:    4 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKSD 145          
BLAST of FC920221 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.058e-60
Identity = 116/143 (81.12%), Postives = 120/143 (83.92%), Query Frame = 1
Query:   88 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 516
            KIKIGINGFGRIGRLVARVALQ DDVELVAVNDPFISTDYMTYMFKYD+VHGQWKH+E+KVKD KTLLFGEK VAVFG RNPEEIPW   GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNEKEYK +
Sbjct:    3 KIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKSD 145          
BLAST of FC920221 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.079e-60
Identity = 113/143 (79.02%), Postives = 122/143 (85.31%), Query Frame = 1
Query:   88 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 516
            K+KIGINGFGRIGRLVARVAL RDDVELVAVNDPFI+ DYM YMFKYD+VHGQ+KH+ELKVKDEKTLLFG+KPVAVFG RNPEEIPWA+TGAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNEK Y P+
Sbjct:    3 KVKIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKTYTPD 145          
BLAST of FC920221 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 4.021e-60
Identity = 112/143 (78.32%), Postives = 120/143 (83.92%), Query Frame = 1
Query:   88 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 516
            K+KIGINGFGRIGRLVARV LQ DD ELVA+NDPFI+TDYMTYMFKYDSVHGQWKH+ELKVKDEKTLLFGE+PV VFG RNPEEIPW +TGA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNE EYK E
Sbjct:    3 KVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKSE 145          
BLAST of FC920221 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 5.252e-60
Identity = 114/143 (79.72%), Postives = 120/143 (83.92%), Query Frame = 1
Query:   88 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 516
            KIKIGINGFGRIGRLVARVAL RDDVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+ELKVKDEKTLLFGEKPV VFG RNPEEIPW +TGAE+VVESTGVFT               VVISAPS DAPMFVVGVN  EYK +
Sbjct:    4 KIKIGINGFGRIGRLVARVALARDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCRNPEEIPWGETGAEFVVESTGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNHTEYKSD 146          
BLAST of FC920221 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.404e-59
Identity = 113/148 (76.35%), Postives = 120/148 (81.08%), Query Frame = 1
Query:   73 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 516
            M+   KIKIGINGFGRIGRLVARVAL RDD+ELVAVNDPFISTDYMTYMFKYDSVHGQWK +E+KVKD  TLLFGEK V VFG RNPEEIPW +TG EYVVESTGVFT               VVI+APSKDAPMFVVGVNE EYKP+
Sbjct:    1 MSSTGKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVGVNEHEYKPD 148          
The following BLAST results are available for this feature:
BLAST of FC920221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
G3PC_MAGLI8.657e-6381.94Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH1.131e-6280.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL1.633e-6179.31Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY3.637e-6179.72Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA6.204e-6182.39Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE1.058e-6081.12Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL3.079e-6079.02Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU4.021e-6078.32Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_RANAC5.252e-6079.72Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI3.404e-5976.35Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC32005E08EF RVDevelop1 Citrus clementina cDNA clone C32005E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920221 ID=FC920221; Name=FC920221; organism=Citrus clementina; type=EST; length=518bp
GACAACAACGCGCCCAACCAAAATTGCAGCGTTAAACAAACCTTCACTAC
TTTCTCATTTTCGATAATATCAATGGCCGGAGACAAGAAGATTAAGATCG
GAATCAACGGTTTCGGAAGGATCGGCCGTTTGGTTGCGAGAGTCGCACTC
CAGAGGGATGATGTGGAGCTGGTGGCTGTCAACGATCCTTTCATCTCCAC
TGATTACATGACATACATGTTTAAGTACGATAGTGTTCACGGTCAGTGGA
AGCACAACGAGTTGAAGGTCAAGGACGAGAAGACCCTCCTCTTCGGTGAG
AAGCCAGTCGCTGTTTTCGGATTCAGGAACCCAGAGGAGATCCCATGGGC
AAAGACTGGAGCCGAGTATGTTGTGGAATCAACTGGAGTGTTCACTGACA
AGGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTCGTTATC
TCCGCCCCTAGCAAGGATGCTCCCATGTTTGTTGTGGGCGTCAACGAGAA
AGAATACAAGCCAGAGCT
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