FC920227

Overview
NameFC920227
Unique NameFC920227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14120 contig Ccv1_Contig14120:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920227 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  283 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAXNAVLSG 675
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A   +L+G
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAG 237          
BLAST of FC920227 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 42/133 (31.58%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  283 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAXNAVLSG 675
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A   +L+G
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAG 230          
The following BLAST results are available for this feature:
BLAST of FC920227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE1.110e-1232.33Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN1.450e-1231.58Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionC32005F02EF RVDevelop1 Citrus clementina cDNA clone C32005F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920227 ID=FC920227; Name=FC920227; organism=Citrus clementina; type=EST; length=679bp
GGAAACAAGAAGCTAGCTACATCCTCTGATCCTTTCTCCTTGAGCTCCCA
AAAAATTGCCATTACTATTTCTTCCCAATGCACTAACTTGGGCTCCTTTT
GCATACTCTTTAAACTAGTCCCATTTGCAGATAATTTTTTTTTTTGGCCT
CATTTCAGAATGGTTGCTGCAAGAATGGGCCAATGGTTGAATCTTTTAGT
ATGTGCACTCATATTACTGAAAGCTGGCGGCTTTAATGTAGGAATCACTT
ATGTTGAGAATGCTGTAGCGAAAGGAGCTGTTTGTTTGGATGGTAGCCCG
CCTGCTTACCATTTTGATAAGGGGTTTGGTGCTGGGATCAATAATTGGTT
GGTTCACATTGAGGGAGGAGGATGGTGCAACAATGTCACAACTTGTCTTG
AACGTAAGAAAACCCGTTTAGGTTCATCTAAGCAAATGGTCAAGGTAGTT
GCTTTCTCTGGGATGCTGAGCAACAAGCAAAAATTTAACCCAGACTTCTA
CAATTGGAATAGAATCAAGGTTAGATACTGTGATGGTGCATCGTTTACTG
GAGATGTGGAGGCTGTCAATCCAGCAAATAACCTTCACTTCAGAGGAGCA
AGGGTTTTTCAAGCTGTCATGGAGGATCTAATGGCTAAAGGGATGAAAAA
TGCTNCAAATGCTGTTCTTTCTGGCTGCT
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