FC920229

Overview
NameFC920229
Unique NameFC920229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920229_ssr39 microsatellite FC920229_ssr39:39..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13706 contig Ccv1_Contig13706:5..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_YEAST (Eukaryotic translation initiation factor 2 subunit gamma OS=Saccharomyces cerevisiae GN=GCD11 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 122/187 (65.24%), Postives = 145/187 (77.54%), Query Frame = 1
Query:  133 ISFTGLNITSGNTDNKERGIFKETGKMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            ++FTGL       + K +  F+E G     GL EQ L+  D +KL+PLS E+I+RQATINIGTIGHVAHGKSTVV+AISGVQTVRFK+ELERNITIKLGYANAKIYKC++  CP P CY+++ S KE +P C  PG    R KL+RHVSFVDCPGHDILM+TML+GAA+MD ALLLIA NE CP+ Q
Sbjct:   49 VAFTGLEEDGETEEEKRKREFEEGG-----GLPEQPLNP-DFSKLNPLSAEIINRQATINIGTIGHVAHGKSTVVRAISGVQTVRFKDELERNITIKLGYANAKIYKCQEPTCPEPDCYRSFKSDKEISPKCQRPGCPG-RYKLVRHVSFVDCPGHDILMSTMLSGAAVMDAALLLIAGNESCPQPQ 228          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_CHICK (Eukaryotic translation initiation factor 2 subunit 3 OS=Gallus gallus GN=EIF2S3 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 120/156 (76.92%), Postives = 129/156 (82.69%), Query Frame = 1
Query:  226 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            L  QDL+ LDVTKL PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  C RP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:   15 LSRQDLATLDVTKLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCSRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 169          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_RAT (Eukaryotic translation initiation factor 2 subunit 3 OS=Rattus norvegicus GN=Eif2s3 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.322e-61
Identity = 120/156 (76.92%), Postives = 129/156 (82.69%), Query Frame = 1
Query:  226 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            L  QDL+ LDVTKL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:   15 LSRQDLATLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 169          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_PONAB (Eukaryotic translation initiation factor 2 subunit 3 OS=Pongo abelii GN=EIF2S3 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.322e-61
Identity = 120/156 (76.92%), Postives = 129/156 (82.69%), Query Frame = 1
Query:  226 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            L  QDL+ LDVTKL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:   15 LSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 169          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_MOUSE (Eukaryotic translation initiation factor 2 subunit 3, X-linked OS=Mus musculus GN=Eif2s3x PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.322e-61
Identity = 120/156 (76.92%), Postives = 129/156 (82.69%), Query Frame = 1
Query:  226 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            L  QDL+ LDVTKL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:   15 LSRQDLATLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 169          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_HUMAN (Eukaryotic translation initiation factor 2 subunit 3 OS=Homo sapiens GN=EIF2S3 PE=1 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.322e-61
Identity = 120/156 (76.92%), Postives = 129/156 (82.69%), Query Frame = 1
Query:  226 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            L  QDL+ LDVTKL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:   15 LSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 169          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2H_MOUSE (Eukaryotic translation initiation factor 2 subunit 3, Y-linked OS=Mus musculus GN=Eif2s3y PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 5.174e-61
Identity = 118/156 (75.64%), Postives = 129/156 (82.69%), Query Frame = 1
Query:  226 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            L  QDL+ LDVTKL PLS E+ISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    +L+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:   15 LSRQDLATLDVTKLTPLSREIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDSSCPRPECYRSCGSSTPDEFPSDIPGTKG-NFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 169          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_BOVIN (Eukaryotic translation initiation factor 2 subunit 3 OS=Bos taurus GN=EIF2S3 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.757e-61
Identity = 119/156 (76.28%), Postives = 129/156 (82.69%), Query Frame = 1
Query:  226 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            L  QDL+ LDV+KL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYK +D  CPRP CY++ GS   D    D+PG +    KL+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:   15 LSRQDLATLDVSKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKG-NFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 169          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_SCHPO (Eukaryotic translation initiation factor 2 subunit gamma OS=Schizosaccharomyces pombe GN=tif213 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.153e-60
Identity = 112/148 (75.68%), Postives = 127/148 (85.81%), Query Frame = 1
Query:  250 LDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            LD+++L P+ P +ISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIYKC ++ CPRP CY++Y S KED+P C++    N  M L+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:    5 LDISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCSNEECPRPGCYRSYSSNKEDHPPCEIC---NSPMNLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 149          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2GL_HUMAN (Eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.505e-60
Identity = 118/156 (75.64%), Postives = 129/156 (82.69%), Query Frame = 1
Query:  226 LMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            L  QDL+ LDVTKL PLS EVISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLGYANAKIY+ +D  CPRP CY++ GS   D    D+PG +    +L+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:   15 LSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYQLDDPSCPRPECYRSCGSSMPDEFPTDIPGTKG-NFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 169          
The following BLAST results are available for this feature:
BLAST of FC920229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IF2G_YEAST1.778e-6165.24Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_CHICK1.778e-6176.92Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_RAT2.322e-6176.92Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_PONAB2.322e-6176.92Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_MOUSE2.322e-6176.92Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_HUMAN2.322e-6176.92Eukaryotic translation initiation factor 2 subunit... [more]
IF2H_MOUSE5.174e-6175.64Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_BOVIN6.757e-6176.28Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_SCHPO1.153e-6075.68Eukaryotic translation initiation factor 2 subunit... [more]
IF2GL_HUMAN1.505e-6075.64Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC32005F04EF RVDevelop1 Citrus clementina cDNA clone C32005F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920229 ID=FC920229; Name=FC920229; organism=Citrus clementina; type=EST; length=696bp
GGATCGCAAGAAGTCCCCCAAAACCTAAAATTCTCTCTCACACACACACC
CTCTCACAATCAATATAGCGGTAAACCTCAGTCAAATCTCGGTCTCGCAG
TCGTTCTCCGGTCGCAACTTGCTCTGCATTCAATCAGTTTTACGGGCTTG
AACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGTATTTTCAAAGA
AACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAGTAAGT
TGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTCGCCAG
GCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAATCAAC
TGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAATGAAT
TAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGATATAC
AAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCATATGG
AAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGAGAACT
GCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGGGTCAT
GATATTCTTATGGCTACNATGCTTAATGGAGCAGCAATTATGGATGGAGC
ATTGCTTCTCATAGCAGCCAATGAAAGNTGCCCCCGCACACAACAT
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