FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14103 contig Ccv1_Contig14103:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_MICAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.702e-41
Identity = 75/159 (47.17%), Postives = 117/159 (73.58%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E TA ++A  +L+R++  EPQ+KSF+H++ ++ L +AQ +D+KI R E++  LAG+ + +KDN+CT  +P+T  SR+LEN+ PP+++T  +K+++   ++VGKTNLDEF MGS+TE+S + VTANPWD+SRVP             ++CVV+LGSDTG
Sbjct:   14 KEKTAVEIATEFLARIQALEPQVKSFLHLTPDLALAQAQKVDEKIARGESLHLLAGIPIALKDNLCTKGIPTTCASRILENFVPPYESTVTQKLRDLGAVIVGKTNLDEFAMGSSTENSGYHVTANPWDLSRVPGGSSGGSAAAVAAQECVVALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ANAVT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gatA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 74/159 (46.54%), Postives = 112/159 (70.44%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++ +  L  ++  EP+L SF+H++    L++A+++D KI   E +G LAG+ +GVKDN+CT  +P+T  SR+LEN+ PP+++T  +K+ +   +VVGKTNLDEF MGS+TE+S++QVTANPWD+SRVP              +CVV+LGSDTG
Sbjct:   14 KERSAVEITQETLDHIQELEPKLHSFLHITAQQALEQARAVDAKIAAGEEIGLLAGIPIGVKDNMCTKGIPTTCASRILENFVPPYESTVTQKLLDAGAVVVGKTNLDEFAMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ANASP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena sp. (strain PCC 7120) GN=gatA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 74/159 (46.54%), Postives = 112/159 (70.44%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++ +  L  ++  EP+L SF+H++    L++A+++D KI   E +G LAG+ +GVKDN+CT  +P+T  SR+LEN+ PP+++T  +K+ +   +VVGKTNLDEF MGS+TE+S++QVTANPWD+SRVP              +CVV+LGSDTG
Sbjct:   14 KERSAVEITQETLDHIQELEPKLHSFLHITAQQALEQARAVDAKIAAGEEIGLLAGIPIGVKDNMCTKGIPTTCASRILENFVPPYESTVTQKLLDAGAVVVGKTNLDEFAMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CYAP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7424) GN=gatA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.230e-38
Identity = 75/159 (47.17%), Postives = 109/159 (68.55%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++    L R++  EP L SF+H++ +  L+ A+ +D KI   E +G L G+ VG+KDN+CT  +P+T GS++LEN+ PP+++T  +K+K+   I +GKTNLDEF MGS+TESS +QVTANPWD+SRVP              +CVV+LGSDTG
Sbjct:   14 KERSAVEITTEALDRIEKLEPLLHSFLHITADQALESAKKVDAKIAAKEEIGLLEGIPVGIKDNMCTQGIPTTCGSKILENFVPPYESTVTQKLKDSGAITLGKTNLDEFAMGSSTESSGYQVTANPWDLSRVPGGSSGGSAAAVASEECVVALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_NOSP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gatA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 74/159 (46.54%), Postives = 113/159 (71.07%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++ +  L R++  EP+L SF+ V+    L++A ++D KI   E +G LAG+ VG+KDN+CT  +P+T  SR+LEN+ PP+++TA +K+ +   ++VGKTNLDEF MGS+TE+S++QVTANPW++SRVP             ++CVV+LGSDTG
Sbjct:   14 KERSAVEITQEALERIEALEPKLHSFLCVTAERALEQAGAVDAKIAAGEEIGLLAGIPVGIKDNLCTKGIPTTCASRILENFVPPYESTATQKLADAGAVMVGKTNLDEFAMGSSTENSAYQVTANPWNLSRVPGGSSGGSAAAVSSQECVVALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CYAP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 8801) GN=gatA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 73/159 (45.91%), Postives = 110/159 (69.18%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++    L R+   EPQ+KSF+ ++ +  L+ A+++D KI   E +G LAG+ +G+KDN+ T  +P+T GSR+LEN+ PP+++T  +K++E   ++VGKTNLDEF MGS+TE+S +QVTANPWD+ RVP              +CVV+LGSDTG
Sbjct:   14 KERSAVEITTEALERIAAIEPQVKSFLCITADRALETAKAVDQKIAAKEEIGLLAGIPIGIKDNMSTKGIPTTCGSRILENFIPPYESTVTQKLQEIGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLERVPGGSSGGSAAAVAAEECVVALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CYAA5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain ATCC 51142) GN=gatA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 71/159 (44.65%), Postives = 112/159 (70.44%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++    L R+   + ++KSF+ V+ ++ L+ A+ +D+KI +NE +G LAG+ +G+KDN+CT  + +T GS++L N+ PP+++T  +K+K+   ++VGKTNLDEF MGS+TE+S +QVTANPWD+SRVP              +CVV+LGSDTG
Sbjct:   14 KERSAVEITTEALERINAVDSKVKSFLQVTADHALETAKKVDEKIAKNEEIGLLAGIPIGIKDNMCTTGIKTTCGSKILANFVPPYESTVTQKLKDAGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLSRVPGGSSGGSAAAVAASECVVALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SYNE7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus elongatus (strain PCC 7942) GN=gatA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 70/159 (44.03%), Postives = 111/159 (69.81%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++AE  L R++  EPQLKSF+HV+ +  + +A+++D +I   E +  LAG+ +G+KDN+CT  +P+T  S++L+ + PP+++T  +++ E   + VGKTNLDEF MGS+TE+S++Q TANPWD++RVP              +CVV+LGSDTG
Sbjct:   14 KERSAVEIAEAALQRIETLEPQLKSFLHVTADQAIAQAKAVDQRIAAGEEISLLAGIPIGIKDNLCTRGIPTTCASKILQGFVPPYESTVTQRLAEAGAVAVGKTNLDEFAMGSSTENSAYQTTANPWDLTRVPGGSSGGSAAAVAADECVVALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SYNP6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gatA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 69/159 (43.40%), Postives = 111/159 (69.81%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++AE  L R++  EPQLKSF+HV+ +  + +A+++D +I   E +  LAG+ +G+KDN+CT  +P+T  S++L+ + PP+++T  +++ E   + VGKTNLDEF +GS+TE+S++Q TANPWD++RVP              +CVV+LGSDTG
Sbjct:   14 KERSAVEIAEAALQRIETLEPQLKSFLHVTADQAIAQAKAVDQRIAAGEEISLLAGIPIGIKDNLCTRGIPTTCASKILQGFVPPYESTVTQRLAEAGAVAVGKTNLDEFAVGSSTENSAYQTTANPWDLTRVPGGSSGGSAAAVAADECVVALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SYNJA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain JA-3-3Ab) GN=gatA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 75/159 (47.17%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++A  YL RL   EPQLKSFI V+  + L++A+++D +I+  E +GPLAG+ + VKDN+CT  + +T  SR+LE + PP+++T   ++     + VGKTNLDEF MGS+TE+S+FQ TANPWD++RVP              Q VV+LGSDTG
Sbjct:   14 KERSAEEIAREYLERLAQLEPQLKSFITVTEELALQQAKAVDARIRAGEEIGPLAGIPLAVKDNLCTQGIRTTCASRMLEGFIPPYESTVTARLAAAGMVTVGKTNLDEFAMGSSTENSAFQRTANPWDLTRVPGGSSGGSAAAVAADQAVVALGSDTG 172          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_MICAN7.702e-4147.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_ANAVT9.415e-3946.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ANASP9.415e-3946.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_CYAP71.230e-3847.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_NOSP76.103e-3846.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_CYAP86.103e-3845.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CYAA57.970e-3844.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SYNE71.041e-3744.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNP63.029e-3743.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNJA4.373e-3647.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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