FC920254

Overview
NameFC920254
Unique NameFC920254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: AFC3_ARATH (Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 5.887e-53
Identity = 98/143 (68.53%), Postives = 119/143 (83.22%), Query Frame = 2
Query:  218 MEQERTTKRRRLAWDVAPSEAEAQRALVVGHEGATAAAAKHVSPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            M++ER  KR R+ WD AP+E EA+RA++ GH     +  + +SPP RDDDR+GHYVF+L +NLTPRYKILSKMGEGTFGRVLECWDR T+E VAIK++RSI+KYRDAAMIEIDVLQ L K+DK G + CVQ++NWFDYRNHIC
Sbjct:    9 MDKERVRKRPRMTWDEAPAEPEAKRAVIKGH----GSDGRILSPPLRDDDRDGHYVFSLRDNLTPRYKILSKMGEGTFGRVLECWDRDTKEYVAIKIIRSIKKYRDAAMIEIDVLQKLVKSDK-GRTRCVQMKNWFDYRNHIC 146          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: AFC2_ARATH (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.028e-45
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 2
Query:  230 RTTKRRRLAWDVAPSEAEAQRALVVGHE----------GATA---------AAAKHVSPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            R  KR RL WDV P   +AQ  +  G E          GA +           A++ SPP R+DD++GHY+F LG++LTPRYKI SKMGEGTFG+VLECWDR+ +E VA+K+VR ++KYR+AAMIEI++LQ L K+DKGG + CVQIRNWFDYRNHIC
Sbjct:   17 RPRKRARLGWDVLPQATKAQVGMFCGQEIGNISSFASSGAPSDNSSSLCVKGVARNGSPPWREDDKDGHYIFELGDDLTPRYKIYSKMGEGTFGQVLECWDRERKEMVAVKIVRGVKKYREAAMIEIEMLQQLGKHDKGG-NRCVQIRNWFDYRNHIC 173          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: AFC1_ARATH (Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.320e-41
Identity = 96/189 (50.79%), Postives = 115/189 (60.85%), Query Frame = 2
Query:  140 SKLLRSFVLQILRLKIIQRNNK*QTMMEQERTTKRRRLAWDVAPS-------EAEAQRALVVGHEGATAAAAKHV-------------SPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            S + R     I  +   QRN +    +  +R  KR RL WD AP            Q  L  G E A+      V             SPP R DD++GHYVF +G+ LTPRY+ILSKMGEGTFG+VLEC+D + +E VAIKV+RSI KYR+AAMIEIDVLQ L ++D GG S CVQIRNWFDYRNHIC
Sbjct:    3 SSVYRDKASSIAMILETQRNVEFPHRIVDKRPRKRPRLTWDAAPPLLPPPPPPTVFQPPLYYGPEFASGLVPNFVYPNMFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILSKMGEGTFGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGG-SRCVQIRNWFDYRNHIC 190          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLK2_HUMAN (Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.374e-22
Identity = 44/97 (45.36%), Postives = 73/97 (75.26%), Query Frame = 2
Query:  359 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWD-RQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            +DD EGH ++++G+ L  RY+I+S +GEGTFGRV++C D R+   RVA+K+++++ KY++AA +EI+VL+ + + D    + CVQ+ +WFDY  H+C
Sbjct:  144 EDDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMC 240          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: LKH1_SCHPO (Dual specificity protein kinase lkh1 OS=Schizosaccharomyces pombe GN=lkh1 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 54/136 (39.71%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  239 KRRRLAWDVAPSEAEAQRALVVGHEGATAAAAKHVSPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            KR+R AW   P   +  R  V      TA        P   DD +GHY          RY ++  +G GTFG+V++C+D+ T    AIKV R+I KYR+A++IE+ VLQ +A +D    + C+Q+R++FDYR HIC
Sbjct:  312 KRKRAAW---PPYKKVDRVNVPVVHDTTAF------DPSTFDDDDGHYKVVPNSKFANRYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRAIPKYREASLIELRVLQTIAHSDPTNENKCIQLRDYFDYRKHIC 438          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLK2_MOUSE (Dual specificity protein kinase CLK2 OS=Mus musculus GN=Clk2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.549e-21
Identity = 43/97 (44.33%), Postives = 72/97 (74.23%), Query Frame = 2
Query:  359 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWD-RQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            +DD EGH ++++G+ L  RY+I+S +GEGT GRV++C D R+   RVA+K+++++ KY++AA +EI+VL+ + + D    + CVQ+ +WFDY  H+C
Sbjct:  143 EDDAEGHLIYHVGDWLQERYEIVSTLGEGTSGRVVQCVDHRRGGTRVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMC 239          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLK3_RAT (Dual specificity protein kinase CLK3 OS=Rattus norvegicus GN=Clk3 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.851e-20
Identity = 42/97 (43.30%), Postives = 70/97 (72.16%), Query Frame = 2
Query:  359 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDR-QTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            +DD+EGH V  +G+ L  RY+I+  +GEGTFG+V+EC D  + + +VA+K++R++ KYR+AA +EI+VL+ + + DK     CV + +WF++  H+C
Sbjct:  137 EDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMC 233          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLK3_MOUSE (Dual specificity protein kinase CLK3 OS=Mus musculus GN=Clk3 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.851e-20
Identity = 42/97 (43.30%), Postives = 70/97 (72.16%), Query Frame = 2
Query:  359 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDR-QTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            +DD+EGH V  +G+ L  RY+I+  +GEGTFG+V+EC D  + + +VA+K++R++ KYR+AA +EI+VL+ + + DK     CV + +WF++  H+C
Sbjct:  285 EDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMC 381          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLK3_HUMAN (Dual specificity protein kinase CLK3 OS=Homo sapiens GN=CLK3 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.851e-20
Identity = 42/97 (43.30%), Postives = 70/97 (72.16%), Query Frame = 2
Query:  359 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDR-QTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            +DD+EGH V  +G+ L  RY+I+  +GEGTFG+V+EC D  + + +VA+K++R++ KYR+AA +EI+VL+ + + DK     CV + +WF++  H+C
Sbjct:  285 EDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMC 381          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLK3_BOVIN (Dual specificity protein kinase CLK3 OS=Bos taurus GN=CLK3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.851e-20
Identity = 42/97 (43.30%), Postives = 70/97 (72.16%), Query Frame = 2
Query:  359 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDR-QTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            +DD+EGH V  +G+ L  RY+I+  +GEGTFG+V+EC D  + + +VA+K++R++ KYR+AA +EI+VL+ + + DK     CV + +WF++  H+C
Sbjct:  137 EDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMC 233          
The following BLAST results are available for this feature:
BLAST of FC920254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
AFC3_ARATH5.887e-5368.53Serine/threonine-protein kinase AFC3 OS=Arabidopsi... [more]
AFC2_ARATH2.028e-4556.33Serine/threonine-protein kinase AFC2 OS=Arabidopsi... [more]
AFC1_ARATH2.320e-4150.79Serine/threonine-protein kinase AFC1 OS=Arabidopsi... [more]
CLK2_HUMAN5.374e-2245.36Dual specificity protein kinase CLK2 OS=Homo sapie... [more]
LKH1_SCHPO1.197e-2139.71Dual specificity protein kinase lkh1 OS=Schizosacc... [more]
CLK2_MOUSE4.549e-2144.33Dual specificity protein kinase CLK2 OS=Mus muscul... [more]
CLK3_RAT3.851e-2043.30Dual specificity protein kinase CLK3 OS=Rattus nor... [more]
CLK3_MOUSE3.851e-2043.30Dual specificity protein kinase CLK3 OS=Mus muscul... [more]
CLK3_HUMAN3.851e-2043.30Dual specificity protein kinase CLK3 OS=Homo sapie... [more]
CLK3_BOVIN3.851e-2043.30Dual specificity protein kinase CLK3 OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionC32005H10EF RVDevelop1 Citrus clementina cDNA clone C32005H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920254 ID=FC920254; Name=FC920254; organism=Citrus clementina; type=EST; length=648bp
TCGCCGGGGAAGCGCGAAACAGACAATCGTCACATTCGCCCAAAATATTC
CCCCAATGCATAGGAACCCTAATTTCCGAATGCTACCGTCATATCATCTC
TCGCACTCTTATAATTCTGTTCGAATTTTCTACTAATATTCAAAACTATT
GAGGAGTTTTGTGCTGCAGATACTTAGGTTAAAAATCATACAAAGGAATA
ATAAATAGCAAACGATGATGGAGCAGGAGCGAACCACTAAACGACGTCGG
CTCGCTTGGGACGTGGCGCCATCGGAGGCAGAGGCGCAACGGGCTCTGGT
GGTGGGCCATGAAGGGGCTACGGCGGCGGCTGCAAAACACGTGTCGCCGC
CGAGAAGGGACGATGATCGTGAGGGACATTACGTTTTTAATCTCGGCGAA
AATCTCACCCCCAGATATAAAATACTTAGCAAAATGGGTGAAGGCACATT
TGGCCGTGTTTTGGAATGTTGGGACCGTCAAACACAGGAGCGTGTGGCAA
TCAAGGTAGTCAGAAGTATACGCAAGTACCGTGATGCTGCAATGATTGAA
ATCGATGTTCTTCAGCATCTTGCTAAAAATGACAAAGGCGGCAGCTCACA
TTGTGTGCAGATTCGAAATTGGTTTGATTATCGCAATCATATTTGTAT
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