FC920256

Overview
NameFC920256
Unique NameFC920256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:11..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_ARATH (Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic OS=Arabidopsis thaliana GN=GSA1 PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 7.730e-82
Identity = 150/195 (76.92%), Postives = 165/195 (84.62%), Query Frame = 1
Query:   55 MAATITXXXXXXXXSCSSKLTKRFXXXXXXXXXXVKMSVSVEEQKKNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            M+AT+T        SCSSK++KR           +KMSVSV+E+KK+F+L+ SEEAFN AK LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT +E+ I  EG YHGHA
Sbjct:    1 MSATLTGSGTALGFSCSSKISKRVSSSPASNRCCIKMSVSVDEKKKSFSLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTNKEKFIKFEGCYHGHA 195          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_BRANA (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Brassica napus GN=GSA PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.010e-81
Identity = 151/195 (77.44%), Postives = 165/195 (84.62%), Query Frame = 1
Query:   55 MAATITXXXXXXXXSCSSKLTKRFXXXXXXXXXXVKMSVSVEEQKKNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            M+AT+T        SCSSK++KR           +KMSVSV+E+KK+FTL+ SEEAFN AK LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT +E+ I  EG YHGHA
Sbjct:    1 MSATLTGSGTALGFSCSSKISKRVSSSPSTRCS-IKMSVSVDEKKKSFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTNKEKFIKFEGCYHGHA 194          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_ARATH (Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.364e-78
Identity = 149/195 (76.41%), Postives = 161/195 (82.56%), Query Frame = 1
Query:   55 MAATITXXXXXXXXSCSSKLTKRFXXXXXXXXXXVKMSVSVEEQKKNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            MAAT+T        SCS+K +KR           +KMSVSVEE+ K FTL+ SEEAFN AK LMPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG+++ I  EG YHGHA
Sbjct:    1 MAATLTGSGIALGFSCSAKFSKR--ASSSSNRRCIKMSVSVEEKTKKFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGKQKFIKFEGCYHGHA 193          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_TOBAC (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.844e-75
Identity = 139/161 (86.34%), Postives = 148/161 (91.93%), Query Frame = 1
Query:  157 VKMSVSVEEQKKNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            +KM+ SV+E+KK FTL+ SEEAF+ AKELMPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYVGSWGPAIIGHADD+VLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR +II  EG YHGHA
Sbjct:   39 IKMTASVDEKKKTFTLQKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRPKIIKFEGCYHGHA 199          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SOLLC (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.542e-74
Identity = 137/161 (85.09%), Postives = 147/161 (91.30%), Query Frame = 1
Query:  157 VKMSVSVEEQKKNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            ++M+ SV+E+KK FTL+ SEEAF+ AKELMPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYVGSWGPAIIGHADD+VLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT R +II  EG YHGHA
Sbjct:   42 IRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTCRPKIIKFEGCYHGHA 202          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SOYBN (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Glycine max GN=GSA1 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.944e-73
Identity = 137/162 (84.57%), Postives = 144/162 (88.89%), Query Frame = 1
Query:  157 VKMSVSVEEQKKN-FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            V M+VS++ +  N  TL  SEEAF  AKELMPGGVNSPVRAFKSVGGQPIV DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLEN LAE+VI AVPSIEMVRFVNSGTEACMG LRLARA+TGRE+II  EG YHGHA
Sbjct:   26 VAMAVSIDPKTDNKLTLTKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIVIDSVKGSRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENTLAELVIDAVPSIEMVRFVNSGTEACMGALRLARAYTGREKIIKFEGCYHGHA 187          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_ORYSJ (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Oryza sativa subsp. japonica GN=GSA PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.944e-73
Identity = 133/161 (82.61%), Postives = 146/161 (90.68%), Query Frame = 1
Query:  157 VKMSVSVEEQKKNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            V+ ++SVE+ +K +T++ SEE FN AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGS MWD+DGNEYIDYVGSWGPAIIGHADD V AAL ET+KKGTSFGAPC+LENVLAEMVISAVPSIEMVRFVNSGTEACMG LRL RAFTGRE+I+  EG YHGHA
Sbjct:   39 VRAAISVEKGEKAYTVEKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSRMWDVDGNEYIDYVGSWGPAIIGHADDTVNAALIETLKKGTSFGAPCVLENVLAEMVISAVPSIEMVRFVNSGTEACMGALRLVRAFTGREKILKFEGCYHGHA 199          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_HORVU (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Hordeum vulgare GN=GSA PE=1 SV=3)

HSP 1 Score: 272.322 bits (695), Expect = 1.461e-72
Identity = 133/161 (82.61%), Postives = 146/161 (90.68%), Query Frame = 1
Query:  157 VKMSVSVEEQKKNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            V+ +VS++E  K +T++ SEE FN AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWD+DGNEYIDYVGSWGPAIIGHADD+V AAL ET+KKGTSFGAPC LENVLA+MVISAVPSIEMVRFVNSGTEACMG LRL RAFTGRE+I+  EG YHGHA
Sbjct:   32 VRAAVSIDE--KAYTVQKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDVDGNEYIDYVGSWGPAIIGHADDKVNAALIETLKKGTSFGAPCALENVLAQMVISAVPSIEMVRFVNSGTEACMGALRLVRAFTGREKILKFEGCYHGHA 190          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNP2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemL PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 9.493e-64
Identity = 116/143 (81.12%), Postives = 130/143 (90.91%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEE F+ A++LMPGGV+SPVRAFKSVGGQPIVFD VKGS +WD+DGNEYIDYVG+WGPAI GHA+D+V AAL ET++KGTSFGAPCL EN+LAEMVI+AVPSIEMVRFVNSGTEACM VLRL RAFTGRE+II  EG YHGHA
Sbjct:   11 SEEIFSAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKGSRVWDVDGNEYIDYVGTWGPAICGHANDEVNAALRETLEKGTSFGAPCLKENILAEMVINAVPSIEMVRFVNSGTEACMSVLRLMRAFTGREKIIKFEGCYHGHA 153          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_ACAM1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Acaryochloris marina (strain MBIC 11017) GN=hemL PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.988e-62
Identity = 112/143 (78.32%), Postives = 126/143 (88.11%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEE F  A++LMPGGV+SPVRAFKSVGGQPIVFD VKG+H+WD+DGN+YIDYVG+WGPAI GHA  +VL AL E + KGTSFGAPCLLENVLAEMVI AVPS+E+VRFVNSGTEACM VLRL RAFTGRE++I  EG YHGHA
Sbjct:   11 SEEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKGAHVWDVDGNQYIDYVGTWGPAICGHAHPEVLTALKEALDKGTSFGAPCLLENVLAEMVIDAVPSVEVVRFVNSGTEACMSVLRLMRAFTGREKVIKFEGCYHGHA 153          
The following BLAST results are available for this feature:
BLAST of FC920256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_ARATH7.730e-8276.92Glutamate-1-semialdehyde 2,1-aminomutase 1, chloro... [more]
GSA_BRANA5.010e-8177.44Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA2_ARATH1.364e-7876.41Glutamate-1-semialdehyde 2,1-aminomutase 2, chloro... [more]
GSA_TOBAC1.844e-7586.34Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SOLLC4.542e-7485.09Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SOYBN2.944e-7384.57Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_ORYSJ2.944e-7382.61Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_HORVU1.461e-7282.61Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SYNP29.493e-6481.12Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_ACAM13.988e-6278.32Glutamate-1-semialdehyde 2,1-aminomutase OS=Acaryo... [more]

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Properties
Property NameValue
Genbank descriptionC32006A02EF RVDevelop1 Citrus clementina cDNA clone C32006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920256 ID=FC920256; Name=FC920256; organism=Citrus clementina; type=EST; length=639bp
ATCTTGATTGACCTTTGATGAGAAAAAGAGACATCTATAAAAAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGGATCCTCTCGC
TGTAGTGTTAAAATGTCAGTCTCTGTTGAGGAGCAGAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCT
ATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCACG
CAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACC
AGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAAT
CTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAACTCAGGCACAG
AAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCACTGGGAGAGAG
AGGATCATCACAATTGAGGGTTGGTATCATGGCCATGCT
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