FC920267

Overview
NameFC920267
Unique NameFC920267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14100 contig Ccv1_Contig14100:55..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920267 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.197e-49
Identity = 84/165 (50.91%), Postives = 96/165 (58.18%), Query Frame = 1
Query:   49 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSIYQAYELIHARWAMLGAAG 543
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV G+                                      YGYDPFGL KKP++F+ YQA+ELIHARWAMLGAAG
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGD--------------------------------------YGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAG 127          

HSP 2 Score: 66.2402 bits (160), Expect = 2.197e-49
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 2
Query:  566 KFGAHCGPEAVWFKTGALLLDGNTLNYFGK 655
            K+GA+CGPEAVWFKTGALLLDGNTLNYFGK
Sbjct:  136 KYGANCGPEAVWFKTGALLLDGNTLNYFGK 165          
BLAST of FC920267 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.322e-11
Identity = 38/105 (36.19%), Postives = 47/105 (44.76%), Query Frame = 1
Query:  229 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSIYQAYELIHARWAMLGAAG 543
            ++YGPDR  FL  G    ++ PEYLTGE PG+                                      YG+D  GLS  P  F+ Y+  ELIHARWA+LGA G
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGD--------------------------------------YGWDTAGLSADPQTFARYREIELIHARWALLGALG 96          

HSP 2 Score: 26.9498 bits (58), Expect = 2.322e-11
Identity = 11/21 (52.38%), Postives = 12/21 (57.14%), Query Frame = 2
Query:  590 EAVWFKTGALLLDGNTLNYFG 652
            E VWFK GA +     LNY G
Sbjct:  113 EPVWFKAGAQIFADGGLNYLG 133          
The following BLAST results are available for this feature:
BLAST of FC920267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB26_ARATH2.197e-4950.91Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE2.322e-1136.19Chlorophyll a-b binding protein of LHCII type I, c... [more]
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Properties
Property NameValue
Genbank descriptionC32006B02EF RVDevelop1 Citrus clementina cDNA clone C32006B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920267 ID=FC920267; Name=FC920267; organism=Citrus clementina; type=EST; length=658bp
ACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCAT
TGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTA
GGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCT
CTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGC
CGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAA
GAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTAC
TTGACCGGAGAAGTTCCCGGAGAGTAGGATTGTCCTTCTTCTTCCCTTCA
GGGCCTCAGATGATTTTTCGTGAACATTGTTTAGTTGAATGTTTTTTAAA
ACATTAATACATAATGAATTTTGTTGCTTTAATGCAGCTATGGTTACGAT
CCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCATATATCAGGCATA
TGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTCATCAT
TCCTGAAGCCTTTACAAGTTTGGTGCTCACTGTGGTCCTGAAGCTGTCTG
GTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCG
GAAAGACA
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