FC920275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_SPIOL (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.014e-40 Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 2 Query: 407 QKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGNLTT 691 +K V VK ++KPRLVLKFIWMEKNIGLALDQTIPG+GT+PLS Y+FWPRKDAWEELK LE+KPWISQK MIILLNQ TDIINLWQQSGGNL + Sbjct: 85 EKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIINLWQQSGGNLAS 179
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP31_ARATH (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=At1g68590 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 9.495e-39 Identity = 98/209 (46.89%), Postives = 117/209 (55.98%), Query Frame = 2 Query: 68 MLSSMALQSTVNGAFTTRSSFPSQKLTVKPTKTT-ILHQNRTKPISRNQRLVXXXXXXXXXXXXXXXXXXXXXXXXPVETKVQTKSLSPSLHMCVYVYCFT**KLCVXXXXSSGQKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGNLTT 691 M+SSMAL ST + SSF SQ + T + + H TKPIS ++++ T + T +P + V VK EK R+VLKF+WMEKNIGL LDQ +PG+GTIPLS YFFWPRKDAWEELK+TLE+KPWISQK MIILLNQ TDIINLWQQSGGNLT+ Sbjct: 1 MMSSMALSST-----SLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETV--------------TGIDTSDNTPQQTIKV-------------------------VKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLTS 165
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP32_ARATH (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=At5g15760 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36 Identity = 88/212 (41.51%), Postives = 116/212 (54.72%), Query Frame = 2 Query: 80 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVXXXXXXXXXXXXXXXXXXXXXXXXPVETKVQTKSLSPSLHMCVY--VYCFT**KLCVXXXXSSGQ-------KAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGNLT 688 MA+Q+ + +F R++ PSQKL+ KP L + KP SR + + P+ H C+ ++ + L + K V VK LEKP++VLKF+WM+K+IG+ALD IPG+GTIPLS Y+FWPRKDAWEELKT LESKPWIS+ + LLNQ TDIINLWQ SGG+L+ Sbjct: 1 MAVQANQSASFGFRTASPSQKLSSKPIAHISL-STKLKPSSRPS----------------------------LSCSTWNQGQIPARHSCINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_HORVU (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34 Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 2 Query: 419 VSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGNLTT 691 V V + + P LVLKFIWMEKNIG+ALDQ +PG G+IPLS Y+FWPRKDAWEEL+ LE K WISQK MIILLNQ TDIINLWQQ GG+L+T Sbjct: 91 VEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLST 181
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_PORYE (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra yezoensis GN=ycf65 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21 Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 2 Query: 419 VSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676 + +K L K LK +W+E NI +A+DQ + G GT PL+ YFFWPR DAWEELK LESKPWI+++ I LLN+ T++IN WQ+ G Sbjct: 1 MEIKNLSK--FTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELLNKTTEVINYWQEEG 83
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_CYAP4 (Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=Cyan7425_0465 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21 Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 2 Query: 422 SVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682 ++ ++ + +LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE+LKT LE K WIS+ I LLN+ TDIIN WQ+ G N Sbjct: 5 TILEVSLSQFILKVLWLDSNVALAVDQVV-GKGTSPLTSYFFWPRADAWEQLKTELEKKTWISEADRIALLNRATDIINYWQEEGRN 90
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_PORPU (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea GN=ycf65 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21 Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 2 Query: 446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676 + LK +W+E NI +A+DQ + G GT PL+ YFFWPR DAWEELK LESKPWI+++ I LLN+ T++IN WQ+ G Sbjct: 3 KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELLNKTTEVINYWQEEG 78
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_THEEB (Probable 30S ribosomal protein PSRP-3 OS=Thermosynechococcus elongatus (strain BP-1) GN=tlr0301 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 419 VSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682 +S ++LE R L+ +W+EK++ +A+DQ + G GT PL+ YFFWPR DAWE LK LE K WI++ I LLN+ T+IIN WQ+ G N Sbjct: 3 ISFRRLELSRFTLRVLWLEKDVAIAVDQIV-GKGTSPLTSYFFWPRTDAWELLKAELEKKSWITEAERIELLNRATEIINYWQEEGKN 89
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_MESVI (Probable 30S ribosomal protein 3, chloroplastic OS=Mesostigma viride GN=ycf65 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 2 Query: 446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQ 670 + VLKF+W+EKN+ + +DQ + G P+++YFFWPRKDAWEELK L +KPWIS I LLNQ TD+IN WQ+ Sbjct: 20 KFVLKFLWLEKNLAVTVDQ-VTNRGNSPITEYFFWPRKDAWEELKDALANKPWISYDESIALLNQTTDVINYWQE 93
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_ANAVT (Probable 30S ribosomal protein PSRP-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_3866 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20 Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 2 Query: 446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682 + +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WIS + LLN+ T++IN WQ+ G N Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN 80 The following BLAST results are available for this feature:
BLAST of FC920275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920275 ID=FC920275; Name=FC920275; organism=Citrus clementina; type=EST; length=699bpback to top |