FC920276

Overview
NameFC920276
Unique NameFC920276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920276_ssr121 microsatellite FC920276_ssr121:121..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920276 vs. ExPASy Swiss-Prot
Match: F108C_CHICK (Abhydrolase domain-containing protein FAM108C1 OS=Gallus gallus GN=FAM108C1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.380e-20
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  302 YDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILCGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLR 529
            YDYSGYG STGKPSE N YADI+A +Q L+T YGVS E++IL GQS+G+ PT+ LAS+      V+LHS ++SGLR
Sbjct:  147 YDYSGYGVSTGKPSEKNLYADIDAAWQALRTRYGVSPENIILYGQSIGTVPTVDLASRY-ECAAVILHSPLMSGLR 221
[Close]
BLAST of FC920276 vs. ExPASy Swiss-Prot
Match: F108C_MOUSE (Abhydrolase domain-containing protein FAM108C1 OS=Mus musculus GN=Fam108c1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.147e-19
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  302 YDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILCGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLR 529
            YDYSGYG S+GKPSE N YADI+A +Q L+T YGVS E++IL GQS+G+ PT+ LAS+      V+LHS ++SGLR
Sbjct:  157 YDYSGYGVSSGKPSEKNLYADIDAAWQALRTRYGVSPENIILYGQSIGTVPTVDLASRY-ECAAVILHSPLMSGLR 231
[Close]
BLAST of FC920276 vs. ExPASy Swiss-Prot
Match: F108C_HUMAN (Abhydrolase domain-containing protein FAM108C1 OS=Homo sapiens GN=FAM108C1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.147e-19
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  302 YDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILCGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLR 529
            YDYSGYG S+GKPSE N YADI+A +Q L+T YGVS E++IL GQS+G+ PT+ LAS+      V+LHS ++SGLR
Sbjct:  166 YDYSGYGVSSGKPSEKNLYADIDAAWQALRTRYGVSPENIILYGQSIGTVPTVDLASRY-ECAAVILHSPLMSGLR 240
[Close]
BLAST of FC920276 vs. ExPASy Swiss-Prot
Match: F108C_BOVIN (Abhydrolase domain-containing protein FAM108C1 OS=Bos taurus GN=FAM108C1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.147e-19
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  302 YDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILCGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLR 529
            YDYSGYG S+GKPSE N YADI+A +Q L+T YGVS E++IL GQS+G+ PT+ LAS+      V+LHS ++SGLR
Sbjct:  166 YDYSGYGVSSGKPSEKNLYADIDAAWQALRTRYGVSPENIILYGQSIGTVPTVDLASRY-ECAAVILHSPLMSGLR 240
[Close]
BLAST of FC920276 vs. ExPASy Swiss-Prot
Match: F108C_DANRE (Abhydrolase domain-containing protein FAM108C1 OS=Danio rerio GN=fam108c1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  302 YDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILCGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLR 529
            YDYSGYG STGKPSE N YADIEA +Q L+ +YGV+ E++IL GQS+G+ PT+ LAS+      V+LHS ++SGLR
Sbjct:  131 YDYSGYGVSTGKPSEKNLYADIEAAWQVLRNKYGVTPENIILYGQSIGTVPTVDLASRY-ECAAVILHSPLMSGLR 205
[Close]
BLAST of FC920276 vs. ExPASy Swiss-Prot
Match: F108C_XENTR (Abhydrolase domain-containing protein FAM108C1 OS=Xenopus tropicalis GN=fam108c1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.160e-19
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 2 
Query:  302 YDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILCGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLR 529
            YDYSGYG S+GKPSE N YADIEA +  L+T YGV+ E++IL GQS+G+ PT+ LAS+      V+LHS ++SGLR
Sbjct:  147 YDYSGYGVSSGKPSEKNLYADIEAAWHALRTRYGVTPENIILYGQSIGTVPTVDLASRY-ECAAVILHSPLMSGLR 221
[Close]
BLAST of FC920276 vs. ExPASy Swiss-Prot
Match: F108C_XENLA (Abhydrolase domain-containing protein FAM108C1 OS=Xenopus laevis GN=fam108c1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.160e-19
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 2 
Query:  302 YDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILCGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLR 529
            YDYSGYG S+GKPSE N YADIEA +  L+T YGV+ E++IL GQS+G+ PT+ LAS+      V+LHS ++SGLR
Sbjct:  148 YDYSGYGVSSGKPSEKNLYADIEAAWHALRTRYGVTPENIILYGQSIGTVPTVDLASRY-ECAAVILHSPLMSGLR 222
[Close]
BLAST of FC920276 vs. ExPASy Swiss-Prot
Match: F18A1_HUMAN (Abhydrolase domain-containing protein FAM108A1 OS=Homo sapiens GN=FAM108A1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.374e-18
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 2 
Query:  302 YDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILCGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLR 529
            YDYSGYGAS+G+PSE N YADI+A +Q L+T YG+S + +IL GQS+G+ PT+ LAS+      VVLHS + SG+R
Sbjct:  145 YDYSGYGASSGRPSERNLYADIDAAWQALRTRYGISPDSIILYGQSIGTVPTVDLASRY-ECAAVVLHSPLTSGMR 219
[Close]
BLAST of FC920276 vs. ExPASy Swiss-Prot
Match: F108A_BOVIN (Abhydrolase domain-containing protein FAM108A OS=Bos taurus GN=FAM108A PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.101e-18
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 2 
Query:  302 YDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILCGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLR 529
            YDYSGYG S+GKPSE N YADI+A +Q L+T YG+S + ++L GQS+G+ PT+ LAS+      VVLHS + SG+R
Sbjct:  145 YDYSGYGVSSGKPSEKNLYADIDAAWQALRTRYGISPDSIVLYGQSIGTVPTVDLASRY-ECAAVVLHSPLTSGMR 219
[Close]
BLAST of FC920276 vs. ExPASy Swiss-Prot
Match: F18A6_HUMAN (Putative abhydrolase domain-containing protein FAM108A6 OS=Homo sapiens GN=FAM108A6 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.050e-18
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 2 
Query:  302 YDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILCGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLR 529
            YDYSGYGAS G+PSE N YADI+A +Q L T YG+S + +IL GQS+G+ PT+ LAS+      VVLHS + SG+R
Sbjct:  135 YDYSGYGASAGRPSERNLYADIDAAWQALHTRYGISPDSIILYGQSIGTVPTVDLASRY-ECAAVVLHSPLTSGMR 209
The following BLAST results are available for this feature:
BLAST of FC920276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
F108C_CHICK7.380e-2061.84Abhydrolase domain-containing protein FAM108C1 OS=... [more]
F108C_MOUSE2.147e-1960.53Abhydrolase domain-containing protein FAM108C1 OS=... [more]
F108C_HUMAN2.147e-1960.53Abhydrolase domain-containing protein FAM108C1 OS=... [more]
F108C_BOVIN2.147e-1960.53Abhydrolase domain-containing protein FAM108C1 OS=... [more]
F108C_DANRE2.805e-1960.53Abhydrolase domain-containing protein FAM108C1 OS=... [more]
F108C_XENTR8.160e-1959.21Abhydrolase domain-containing protein FAM108C1 OS=... [more]
F108C_XENLA8.160e-1959.21Abhydrolase domain-containing protein FAM108C1 OS=... [more]
F18A1_HUMAN2.374e-1857.89Abhydrolase domain-containing protein FAM108A1 OS=... [more]
F108A_BOVIN3.101e-1856.58Abhydrolase domain-containing protein FAM108A OS=B... [more]
F18A6_HUMAN4.050e-1857.89Putative abhydrolase domain-containing protein FAM... [more]

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Properties
Property NameValue
Genbank descriptionC32006B12EF RVDevelop1 Citrus clementina cDNA clone C32006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920276 ID=FC920276; Name=FC920276; organism=Citrus clementina; type=EST; length=530bp
GATTTGAGTTCTGTGACGCACAGCTTTCACTTTATATTGTTCTTGTTCAC
AGAGAACTGCTTTTCTTTGTCATTTCTGGCACTCTGTTTTTTCCATGAGC
TAAATTTTGAAGAAACATTATCTTCTTCTTCTTCTTCTTCTTTGTCTTAT
TTATCTTAATAGTAATTTCCTCGATATGTGAGATTAACAACTATTTCTAT
AAAGCATTTTCAGATGTAGTTTTCGATTTTCTGCTTCTATTTTGCCATTT
TTTTAACGGGGTTACATTTTAATCTGAGCCATCTAAATTTTATGGTGCAG
ATATGACTATTCTGGCTATGGAGCCTCTACTGGCAAGCCAAGTGAATCCA
ATACATATGCTGATATAGAGGCAGTTTACCAATGTCTTCAGACAGAGTAT
GGAGTAAGCCAGGAAGATTTAATTTTATGTGGACAGTCAGTTGGCAGTGG
GCCGACGCTGCATTTGGCATCTAAGTTGCCAAGGCTAAGGGGTGTTGTTC
TCCATAGTGGCATTCTTTCTGGCCTTCGTG
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