FC920282

Overview
NameFC920282
Unique NameFC920282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14866 contig Ccv1_Contig14866:19..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.426e-14
Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 1
Query:  121 ENILGSVGAEADDERIEFLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 387
            ++IL SVGA+ADD++IE LLS+VKGKDITELIASGRE+L                                        D+++GFSLFD
Sbjct:   24 KSILASVGADADDDKIELLLSQVKGKDITELIASGRERLASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKSEEESDEELGFSLFD 112          

HSP 2 Score: 34.2686 bits (77), Expect = 2.426e-14
Identity = 15/24 (62.50%), Postives = 20/24 (83.33%), Query Frame = 3
Query:   51 MKVIAAYLPAVLGGNAKPSADDLR 122
            MKVIAA+L A+LGGN  P+ +DL+
Sbjct:    1 MKVIAAFLLALLGGNTSPTDEDLK 24          
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.151e-14
Identity = 27/39 (69.23%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  121 ENILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 237
            ++IL SVGAEAD+E++EFLL+E+K KDITE+IA+GRE+L
Sbjct:   24 KSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERL 62          

HSP 2 Score: 39.6614 bits (91), Expect = 4.151e-14
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 3
Query:   51 MKVIAAYLPAVLGGNAKPSADDLR 122
            MKVIAAYL AVLGGN  P+ADD++
Sbjct:    1 MKVIAAYLLAVLGGNTSPTADDVK 24          
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 58.5362 bits (140), Expect = 9.112e-14
Identity = 35/87 (40.23%), Postives = 41/87 (47.13%), Query Frame = 1
Query:  127 ILGSVGAEADDERIEFLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 387
            IL SVG E D+E++E LLS++ GKDITELIA+GREK                                         DDDMGFSLFD
Sbjct:   26 ILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKFASVPCGGGGVAVAAAAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112          

HSP 2 Score: 38.1206 bits (87), Expect = 9.112e-14
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 3
Query:   51 MKVIAAYLPAVLGGNAKPSADDL 119
            MK +AAYL AVL GNA PSADDL
Sbjct:    1 MKFVAAYLLAVLAGNASPSADDL 23          
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 5.703e-13
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query:  121 ENILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 237
            ++I+G+VGA+ D E IE LL EV GKDI ELIASGREKL
Sbjct:   24 KDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62          

HSP 2 Score: 38.1206 bits (87), Expect = 5.703e-13
Identity = 17/25 (68.00%), Postives = 22/25 (88.00%), Query Frame = 3
Query:   51 MKVIAAYLPAVLGGNAKPSADDLRE 125
            MKV AA+L AVLGGNA PSAD++++
Sbjct:    1 MKVAAAFLLAVLGGNANPSADNIKD 25          
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 4.568e-12
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1
Query:  121 ENILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 237
            + ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL
Sbjct:   24 KTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          

HSP 2 Score: 32.3426 bits (72), Expect = 4.568e-12
Identity = 14/24 (58.33%), Postives = 19/24 (79.17%), Query Frame = 3
Query:   51 MKVIAAYLPAVLGGNAKPSADDLR 122
            MKV+AAYL AVL G A P++ D++
Sbjct:    1 MKVVAAYLLAVLSGKASPTSADIK 24          
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 5.934e-12
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1
Query:  121 ENILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 237
            ++ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL
Sbjct:   24 KDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          

HSP 2 Score: 31.5722 bits (70), Expect = 5.934e-12
Identity = 13/25 (52.00%), Postives = 19/25 (76.00%), Query Frame = 3
Query:   51 MKVIAAYLPAVLGGNAKPSADDLRE 125
            MKV+AA+L AVL G A P+  D+++
Sbjct:    1 MKVVAAFLLAVLSGKASPTTGDIKD 25          
The following BLAST results are available for this feature:
BLAST of FC920282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RLA2_PARAR2.426e-1441.5760S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA2B_MAIZE4.151e-1469.2360S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA2A_MAIZE9.112e-1440.2360S acidic ribosomal protein P2A OS=Zea mays GN=RP... [more]
RLA24_ARATH5.703e-1369.2360S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA22_ARATH4.568e-1271.7960S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
RLA21_ARATH5.934e-1271.7960S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC32006C07EF RVDevelop1 Citrus clementina cDNA clone C32006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920282 ID=FC920282; Name=FC920282; organism=Citrus clementina; type=EST; length=596bp
GTTGTTGAAAAGTCTCTCTTTATCGTCTCACCTCTCTGCTATAAGCAAAA
ATGAAGGTGATCGCTGCTTACTTGCCCGCCGTTTTGGGTGGCAACGCCAA
ACCATCGGCCGATGACTTGAGAGAACATTCTTGGATCAGTTGGAGCTGAA
GCTGATGATGAGAGAATAGAGTTTCTCTTGTCAGAAGTCAAGGGCAAGGA
TATTACCGAGCTAATTGCATCCGGAAGGGAGAAGTTGGCATCAGTGCCAT
CAGGTGGTGGTGTTGCTGTTGCTGCATCAGCACCTGCTGCAGGTGGTGCT
GCTGCTCCTGCCGCTGAGGCTAAGAAAGAGGAGAAGGTCGAGGAGAAGGA
AGAATCTGATGATGACATGGGTTTCAGCCTTTTCGACTAAGCTCTCAATG
TTGCTTTTTCTGTATGAAGGATTATTATATTTGGTCATTAGCGTTTTTAT
TTGAATGTTACAAGTTTTTGGTTTGTAGCTGGATATGGTTTTCCCATTTT
AGAGATTGTTTGAACTCTTGGAAGTTTTGTTTAGCTCATGAGGTGAAATC
AACATTTCTGTTCAAATTCATTTTTATTATCCTAAAATCTTAATGA
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