FC920285

Overview
NameFC920285
Unique NameFC920285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:90..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.153e-95
Identity = 171/209 (81.82%), Postives = 180/209 (86.12%), Query Frame = 3 
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKNHCQQKVGFHQV*PQ*LFEVQVREPYCARWCYAKLLGCHGPLASR 686
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHL SWEKENVSSEALEAARIACNKYM K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NS HAQEALRRAKFKFP RQK    +K GF +       + + +         AKLLGCHGPLA+R
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANR 209
[Close]
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.593e-94
Identity = 172/209 (82.30%), Postives = 180/209 (86.12%), Query Frame = 3 
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKNHCQQKVGFHQV*PQ*LFEVQVREPYCARWCYAKLLGCHGPLASR 686
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHL SWEKENVSSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NS +AQEALRRAKFKFPGRQK    +K GF ++       ++           AKLLGCHG LA+R
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANR 209
[Close]
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.762e-93
Identity = 171/209 (81.82%), Postives = 177/209 (84.69%), Query Frame = 3 
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKNHCQQKVGFHQV*PQ*LFEVQVREPYCARWCYAKLLGCHGPLASR 686
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHL SWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS HAQEALRRAKFKFPGRQK    +K GF +       + +           AKLLG HGPLA+R
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAAR 209
[Close]
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.154e-91
Identity = 166/209 (79.43%), Postives = 179/209 (85.65%), Query Frame = 3 
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKNHCQQKVGFHQV*PQ*LFEVQVREPYCARWCYAKLLGCHGPLASR 686
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHL SWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQK    +K GF +   +   +++      +    A+LLG HG LA R
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKR 209
[Close]
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 2.154e-91
Identity = 166/209 (79.43%), Postives = 179/209 (85.65%), Query Frame = 3 
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKNHCQQKVGFHQV*PQ*LFEVQVREPYCARWCYAKLLGCHGPLASR 686
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHL SWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQK    +K GF +   +   +++      +    A+LLG HG LA R
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKR 209
[Close]
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.069e-90
Identity = 164/209 (78.47%), Postives = 176/209 (84.21%), Query Frame = 3 
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKNHCQQKVGFHQV*PQ*LFEVQVREPYCARWCYAKLLGCHGPLASR 686
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHL SWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQK    +K GF +       +++  +        AK L CHGPLA+R
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANR 209
[Close]
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 3.110e-90
Identity = 163/209 (77.99%), Postives = 176/209 (84.21%), Query Frame = 3 
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKNHCQQKVGFHQV*PQ*LFEVQVREPYCARWCYAKLLGCHGPLASR 686
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHL SWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQK    +K GF +       +++  +        AK L CHGPLA+R
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANR 209
[Close]
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.048e-90
Identity = 163/209 (77.99%), Postives = 176/209 (84.21%), Query Frame = 3 
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKNHCQQKVGFHQV*PQ*LFEVQVREPYCARWCYAKLLGCHGPLASR 686
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHL SWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ +HAQEALRRAKFKFPGRQK    +K GF +       +++  +        AK L  HGPLA+R
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANR 209
[Close]
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.182e-89
Identity = 164/209 (78.47%), Postives = 175/209 (83.73%), Query Frame = 3 
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKNHCQQKVGFHQV*PQ*LFEVQVREPYCARWCYAKLLGCHGPLASR 686
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHL SWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N++HA EALRRAKFKFPGRQK    +K GF +        ++           AKLLGCHG L++R
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSAR 209
[Close]
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.182e-89
Identity = 164/209 (78.47%), Postives = 175/209 (83.73%), Query Frame = 3 
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKNHCQQKVGFHQV*PQ*LFEVQVREPYCARWCYAKLLGCHGPLASR 686
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHL SWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N++HA EALRRAKFKFPGRQK    +K GF +        ++           AKLLGCHG L++R
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSAR 209
The following BLAST results are available for this feature:
BLAST of FC920285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_VITRI7.153e-9581.8260S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_EUPES1.593e-9482.3060S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_SOLME1.762e-9381.8260S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL101_ORYSJ2.154e-9179.4360S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI2.154e-9179.4360S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ARATH1.069e-9078.4760S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL102_ARATH3.110e-9077.9960S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL103_ARATH9.048e-9077.9960S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL102_ORYSJ1.182e-8978.4760S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI1.182e-8978.4760S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC32006C11EF RVDevelop1 Citrus clementina cDNA clone C32006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920285 ID=FC920285; Name=FC920285; organism=Citrus clementina; type=EST; length=700bp
GCCGGGGACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGG
GCTTTCGCCATGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAA
TAAGCCGTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGA
TCAGGATCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCT
TTCTGTGTGCACTTGGCGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGC
TCTTGAGGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCG
GGAAAGATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTG
CGTATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGG
TATGAGGGGTGCTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCA
TTGGACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCAT
GCTCAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAA
AAATCATTGTCAGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGAT
TATTTGAGGTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTATGCA
AAGCTTCTTGGATGTCATGGACCTTTGGCGAGTCGCAACCAGGAAGAGCT
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