FC920286

Overview
NameFC920286
Unique NameFC920286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10637 contig Ccv1_Contig10637:127..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920286 vs. ExPASy Swiss-Prot
Match: MORC3_HUMAN (MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.108e-23
Identity = 61/140 (43.57%), Postives = 87/140 (62.14%), Query Frame = 2
Query:  281 PKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFLDDGGGMDPESLRKCMSLGYS---TKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKATQSIGLLSYTYLRKTGQDDVIVPMI 691
            PKFLH+N+TSH W F A+AEL+DNA D   N A  + +D+  I  ++   L F D+G GM  + L K +S G+S   T   +  +G YGNGFK+ +MRLG D IVF++    +  + S+GLLS TYL     + V+VP++
Sbjct:   16 PKFLHTNSTSHTWPFSAVAELIDNAYDPDVN-AKQIWIDKTVI--NDHICLTFTDNGNGMTSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTK----NGESMSVGLLSQTYLEVIKAEHVVVPIV 148          
BLAST of FC920286 vs. ExPASy Swiss-Prot
Match: MORC4_MOUSE (MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 64/155 (41.29%), Postives = 91/155 (58.71%), Query Frame = 2
Query:  239 STPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVD-EVQNGATFVKVDRVNIMKDNSPALVFLDDGGGMDPESLRKCMSLGYS---TKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKATQSIGLLSYTYLRKTGQDDVIVPMI 691
            S P    +  + + P++L SN++SH   F AIAELLDNAVD +V     F+ V+ V       P L F DDG GM P  L + +S G++    KK+ + IG +GNGFK+ +MRLG D +VF++    +  T ++GLLS TYL       VIVP++
Sbjct:   23 SVPQAFRIRLSTMSPRYLQSNSSSHTRPFSAIAELLDNAVDPDVSARTVFIDVEEVK----KKPCLTFTDDGCGMTPHKLHRMLSFGFTDKVIKKSQRPIGVFGNGFKSGSMRLGKDALVFTK----NGNTLAVGLLSQTYLECIQAQAVIVPIV 169          
BLAST of FC920286 vs. ExPASy Swiss-Prot
Match: MORC4_HUMAN (MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 2
Query:  281 PKFLHSNATSHKWAFGAIAELLDNAVD-EVQNGATFVKVDRVNIMKDNSPALVFLDDGGGMDPESLRKCMSLGYSTKKANKT---IGQYGNGFKTSTMRLGADVIVFSRATHESKATQSIGLLSYTYLRKTGQDDVIVPMI 691
            P++L SN++SH   F AIAELLDNAVD +V     F+ V+ V     N   L F DDG GM P  L + +S G++ K   K+   IG +GNGFK+ +MRLG D +VF++    +  T ++GLLS TYL       VIVP++
Sbjct:   37 PRYLQSNSSSHTRPFSAIAELLDNAVDPDVSARTVFIDVEEVK----NKSCLTFTDDGCGMTPHKLHRMLSFGFTDKVIKKSQCPIGVFGNGFKSGSMRLGKDALVFTK----NGGTLTVGLLSQTYLECVQAQAVIVPIV 169          
BLAST of FC920286 vs. ExPASy Swiss-Prot
Match: MORC1_MOUSE (MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 2
Query:  260 LEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRV-NIMKDNSPALVFLDDGGGMDPESLRKCMSLGYSTKKAN--KTIGQYGNGFKTSTMRLGADVIVFSRATHESKATQSIGLLSYTYLRKTGQDDVIVPM 688
            L+ A++H  F+H+N+T+H + FGA+AELLDNA D    GA  + V  V N        L FLDDG GM P+     +  G S K+ +  K IGQYGNG K+ +MR+G D I+F++     + T +    S T+  K G  +V+VP+
Sbjct:    7 LQRAKLHLDFIHANSTTHSFLFGALAELLDNARDA---GAVRLDVFSVDNETLQGGFMLCFLDDGCGMSPDEASDVIYFGTSKKRLSTLKFIGQYGNGLKSGSMRIGKDCILFTK----KEETMTCLFFSQTFCEKEGLTEVVVPI 145          
BLAST of FC920286 vs. ExPASy Swiss-Prot
Match: MORC2_HUMAN (MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 57/149 (38.26%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  257 SLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPA---LVFLDDGGGMDPESLRKCMSLGYSTKKANKT--IGQYGNGFKTSTMRLGADVIVFSRATHESKATQSIGLLSYTYLRKTGQDDVIVPM 688
            SL  A++  ++LH+N+T+H++ FGA+AEL+DNA D     A   ++D     +++      L FLDDG GMDP      +  G S K+  ++  IGQYGNG K+ +MR+G D I+F++     + T +   LS T+  + G D+VIVP+
Sbjct:    8 SLNRAQLTFEYLHTNSTTHEFLFGALAELVDNARD-----ADATRIDIYAERREDLRGGFMLCFLDDGAGMDPSDAASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFTK----KEDTMTCLFLSRTFHEEEGIDEVIVPL 147          
BLAST of FC920286 vs. ExPASy Swiss-Prot
Match: MOR2A_MOUSE (MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 57/149 (38.26%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  257 SLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPA---LVFLDDGGGMDPESLRKCMSLGYSTKKANKT--IGQYGNGFKTSTMRLGADVIVFSRATHESKATQSIGLLSYTYLRKTGQDDVIVPM 688
            SL  A++  ++LH+N+T+H++ FGA+AEL+DNA D     A   ++D     +++      L FLDDG GMDP      +  G S K+  ++  IGQYGNG K+ +MR+G D I+F++     + T +   LS T+  + G D+VIVP+
Sbjct:    8 SLNRAQLTFEYLHTNSTTHEFLFGALAELVDNARD-----ADATRIDIYAERREDLRGGFMLCFLDDGAGMDPSDAASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFTK----KEDTMTCLFLSRTFHEEEGIDEVIVPL 147          
BLAST of FC920286 vs. ExPASy Swiss-Prot
Match: MORC1_HUMAN (MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = 2
Query:  257 SLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFLDDGGGMDPESLRKCMSLGYSTKKAN--KTIGQYGNGFKTSTMRLGADVIVFSRATHESKATQSIGLLSYTYLRKTGQDDVIVPM 688
            +L+ A++   F+H+N+T+H + FGA+AELLDNA D          VD  N        L FLDDG GM PE     +  G S K+ +  K IGQYGNG K+ +MR+G D I+F++     + T +    S T+  +    +V+VPM
Sbjct:    7 ALQRAQLRLDFIHANSTTHSFLFGALAELLDNARDAGAERLDVFSVD--NEKLQGGFMLCFLDDGCGMSPEEASDIIYFGRSKKRLSTLKFIGQYGNGLKSGSMRIGKDFILFTK----KEETMTCVFFSQTFCEEESLSEVVVPM 146          
BLAST of FC920286 vs. ExPASy Swiss-Prot
Match: MOR2B_MOUSE (MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 54/146 (36.99%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  257 SLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFLDDGGGMDPESLRKCMSLGYSTKKANKT--IGQYGNGFKTSTMRLGADVIVFSRATHESKATQSIGLLSYTYLRKTGQDDVIVPM 688
            +L  A++   +LH+N+T+H + FGA+AEL+DNA D            R ++       L FLD+G GMDP  +   +  G S K+  ++  IG+YGNG K+ +MR+G D I+F++     + T S   LS T+  + G D+VIVP+
Sbjct:    8 TLNRAQLTFDYLHTNSTTHAFLFGALAELIDNARDADATRIDIYAEKREDL--QGGFMLCFLDNGVGMDPNDVINVIQFGKSAKRTPESTQIGRYGNGLKSGSMRIGKDFILFTK----KENTMSCLFLSRTFHEEEGIDEVIVPL 147          
The following BLAST results are available for this feature:
BLAST of FC920286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MORC3_HUMAN1.108e-2343.57MORC family CW-type zinc finger protein 3 OS=Homo ... [more]
MORC4_MOUSE1.890e-2341.29MORC family CW-type zinc finger protein 4 OS=Mus m... [more]
MORC4_HUMAN9.379e-2343.97MORC family CW-type zinc finger protein 4 OS=Homo ... [more]
MORC1_MOUSE5.690e-2040.41MORC family CW-type zinc finger protein 1 OS=Mus m... [more]
MORC2_HUMAN2.162e-1938.26MORC family CW-type zinc finger protein 2 OS=Homo ... [more]
MOR2A_MOUSE2.162e-1938.26MORC family CW-type zinc finger protein 2A OS=Mus ... [more]
MORC1_HUMAN3.688e-1938.36MORC family CW-type zinc finger protein 1 OS=Homo ... [more]
MOR2B_MOUSE9.084e-1836.99MORC family CW-type zinc finger protein 2B OS=Mus ... [more]
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Properties
Property NameValue
Genbank descriptionC32006C12EF RVDevelop1 Citrus clementina cDNA clone C32006C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920286 ID=FC920286; Name=FC920286; organism=Citrus clementina; type=EST; length=693bp
ATCGAAAAATGAAAATCCCCAAGACGTAGTGGAACTCACCAGTAGCGACG
ATGAAGACAATGTAGCAGCTGGTGCTACAAGGCCGCAAGTGAACGCACCT
GCGTCTAAGGCAACGACACAGCAAAGCGTACCTCGACAAAGCGCTGCAGC
GATCGCGTCGTCGCCTCCAGTTAACGAAGCCCCCGAGTCTAGAAGTTTCT
GGAAGGCTGGGACTTATGCTGCGAATATAACCATTAAATCAACTCCTGTT
CAAGGTTCATTGGAGCATGCCCGTGTACATCCGAAATTTCTGCATTCAAA
TGCTACTTCTCATAAATGGGCTTTTGGAGCAATTGCTGAGCTTCTGGACA
ATGCCGTTGATGAGGTACAAAATGGTGCAACCTTTGTGAAGGTTGATAGA
GTCAATATCATGAAGGATAATTCTCCAGCTTTAGTTTTCCTAGATGATGG
TGGTGGAATGGATCCTGAATCGCTGCGGAAATGTATGAGCTTGGGATATT
CTACAAAAAAGGCGAACAAGACTATTGGACAATATGGTAATGGCTTCAAG
ACAAGTACCATGAGGCTTGGTGCTGATGTGATTGTTTTCAGTCGTGCCAC
CCATGAAAGCAAAGCTACCCAGAGCATCGGTCTTCTATCTTATACATATT
TGCGGAAAACTGGGCAGGATGACGTGATTGTTCCAATGATTGA
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