FC920287

Overview
NameFC920287
Unique NameFC920287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14112 contig Ccv1_Contig14112:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920287 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.476e-16
Identity = 61/197 (30.96%), Postives = 95/197 (48.22%), Query Frame = 1
Query:  160 IQIQRDDTTFDAYVVG-KEDAPGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSG-----LDWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSECETAKALEEKLKASGVPYEVHIYPG 717
            ++ +++      Y+   K   PG++V+ EWWG++  + N      +    GF A  PD Y GK   +  +A  LM+      +D   A+    ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   E      + +K+  +GV  +V +Y G
Sbjct:    5 VEFEKNGVKVRGYIATPKWGGPGVIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDE---VIDIAKKVWKNGVDVKVKVYSG 196          
BLAST of FC920287 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 56/170 (32.94%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  220 PGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGL--DTAEAQHLMSGLDWPGAVKDIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSECETAKALEEKLKASGVPYEVHIYPG 717
            P +VVV E  G++  I++ A ++++   G+ AL PD      G   +  + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     E   A E  LKA+   YE +IYPG
Sbjct:   82 PAVVVVHENRGLNPYIEDVARRVAKA--GYIALAPDGLSSVGGYPGNDDKGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPG 244          
BLAST of FC920287 vs. ExPASy Swiss-Prot
Match: DLHH_AQUAE (Putative carboxymethylenebutenolidase OS=Aquifex aeolicus GN=aq_1997 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 57/196 (29.08%), Postives = 95/196 (48.47%), Query Frame = 1
Query:  160 IQIQRDDTTFDAYVVGKEDA-PGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSGL---DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSE-CETAKALEEKLKASGVPYEVHIYPG 717
            ++ +++      Y+   + A P ++V  EWWG++  + N      +L + GF A  PD Y+G+   +  +A  LM+ +         +   ASV ++K       KKVG+TG+C GG LA+  +   PE VDA + FYG+P     +    K P+     E D FV   E  + AK + +    +GV  +V ++ G
Sbjct:    5 VEFEKNGVKVRGYIATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQYADNPDDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEMVDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEVIDIAKTVWK----NGVDVQVKVFSG 196          
The following BLAST results are available for this feature:
BLAST of FC920287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
USF_AQUPY2.476e-1630.96Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
YGHX_ECOLI7.964e-1532.94Putative uncharacterized protein yghX OS=Escherich... [more]
DLHH_AQUAE1.962e-1329.08Putative carboxymethylenebutenolidase OS=Aquifex a... [more]
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Properties
Property NameValue
Genbank descriptionC32006D01EF RVDevelop1 Citrus clementina cDNA clone C32006D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920287 ID=FC920287; Name=FC920287; organism=Citrus clementina; type=EST; length=733bp
TCGCCGGGGACTGAGTAGATAATGCTAGCAGCTGCTTCGAGAATCTTGAG
CAGATCAACTCCGCTTCTTAAGCCCTCTCTCGCAAGGACTCACTTTCCCG
CCGGTTATCGCTTTGCAGTCAGATCAATGGCAGACTCTGCAGCTTCGCCC
TTCAAGAAAATCCAGATTCAGAGAGATGATACTACTTTTGATGCATATGT
GGTTGGCAAAGAAGACGCCCCTGGGATTGTTGTAGTTCAGGAGTGGTGGG
GTGTTGATTTTGAGATCAAGAACCATGCTGTCAAAATCTCCCAACTAAAC
CCTGGATTCAAGGCACTTATACCAGATTTATATCGGGGAAAGGTTGGTTT
GGATACTGCTGAAGCACAGCACTTGATGAGTGGTCTTGATTGGCCAGGTG
CTGTCAAGGATATCCACGCTTCAGTTAATTGGCTTAAGGCAAATGGTTCC
AAGAAGGTTGGCGTGACTGGATATTGCATGGGAGGTGCTCTCGCTATTGC
AAGTTCTGTCTTAGTTCCTGAGGTTGATGCTGTTGTTTCATTTTATGGGG
TTCCCCCACCTGAGCTCGCCGATCCTACCCAGGCTAAGGCACCTGTTCAA
GCTCATTTTGGGGAGCTTGACAATTTTGTTGGCTTTTCAGAATGTGAAAC
TGCCAAAGCATTGGAGGAAAAGCTGAAAGCATCTGGTGTTCCATATGAGG
TACATATTTATCCTGGCAGTGCCATGCTTTCAT
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