FC920290

Overview
NameFC920290
Unique NameFC920290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11674 contig Ccv1_Contig11674:77..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920290 vs. ExPASy Swiss-Prot
Match: PGL1A_ARATH (PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 7.782e-57
Identity = 113/184 (61.41%), Postives = 140/184 (76.09%), Query Frame = 2
Query:  107 MASKVASGFTPQAQRVFAVPVQKPAAALVPFXXXXXXXXXXNTQFSGRQFSVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMDGSEIVVEGP 658
            M SK+    T  + R+F+   +KP+++  P                G+  S+RRR F+LP+KATT+Q G V GD V DS +L YCSI+K EKK++GE+EQEFLQALQ+FYY+GKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI++DEEYDKLK KLK+DGS+IV EGP
Sbjct:    1 MGSKMLFSLT--SPRLFSAVSRKPSSSFSPSPPSPSSRTQWTQLSPGKSISLRRRVFLLPAKATTEQSGPVGGDNV-DSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSEGP 181          

HSP 2 Score: 23.483 bits (49), Expect = 7.782e-57
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  675 QKVYSDLSVDY 707
            +KVYSDL+VDY
Sbjct:  188 KKVYSDLAVDY 198          
BLAST of FC920290 vs. ExPASy Swiss-Prot
Match: PGL1B_ARATH (PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.785e-57
Identity = 109/138 (78.99%), Postives = 124/138 (89.86%), Query Frame = 2
Query:  245 GRQFSVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMDGSEIVVEGP 658
            GR  S+RRR  +LP KA+TDQ GQV G+EV DSKIL YCSI+K EK+++GE+EQEFLQA+Q+FYYEGKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI+SDEEYDKLK KLKMDGSEIV EGP
Sbjct:   34 GRSISLRRRLTLLPLKASTDQSGQVGGEEV-DSKILPYCSINKNEKRTIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILSDEEYDKLKMKLKMDGSEIVCEGP 170          

HSP 2 Score: 23.0978 bits (48), Expect = 7.785e-57
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  675 QKVYSDLSVDY 707
            +KVYSDL++DY
Sbjct:  177 KKVYSDLAIDY 187          
The following BLAST results are available for this feature:
BLAST of FC920290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PGL1A_ARATH7.782e-5761.41PGR5-like protein 1A, chloroplastic OS=Arabidopsis... [more]
PGL1B_ARATH7.785e-5778.99PGR5-like protein 1B, chloroplastic OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC32006D05EF RVDevelop1 Citrus clementina cDNA clone C32006D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920290 ID=FC920290; Name=FC920290; organism=Citrus clementina; type=EST; length=707bp
GACACCAAAAAAATCTATCATCACCATGCATCTCGCTACATCACCAGCTA
CACACTCTATTACTAGTATTTTCACCTGAAACCGAAACTACCATCTCTAT
TTTCAAATGGCTAGCAAAGTAGCCTCTGGTTTTACCCCTCAGGCTCAGCG
CGTCTTCGCTGTCCCTGTGCAAAAGCCAGCTGCAGCCTTGGTTCCTTTTT
CATCCTCTTCAAGGGCTCACTCAAATTCAAATACTCAGTTCAGTGGAAGG
CAGTTTTCTGTTCGACGCAGATCTTTTGTACTGCCCAGCAAGGCTACTAC
TGACCAACAAGGTCAGGTTGAGGGAGATGAGGTAGTCGATAGTAAAATTC
TGCAATATTGTAGCATTGACAAGAAAGAGAAAAAGTCATTGGGTGAACTA
GAACAAGAGTTTCTTCAGGCACTGCAAGCTTTCTATTACGAGGGAAAAGC
TGTTATGTCAAATGAGGAATTTGATAATCTTAAGGAAGAACTGATGTGGG
AAGGAAGCAGCGTCGTCATGCTAAGTTCTGCTGAACAAAAGTTTCTCGAA
GCTTCAATGGCTTATGTGGCTGGGAAACCTATTATGTCGGATGAAGAGTA
TGATAAATTGAAGCAGAAACTAAAGATGGATGGGAGTGAAATTGTGGTTG
AGGGTCCCGGTGCAGTCTCCGTAGCAGAAGGTTTACAGCGACCTGTCAGT
TGACTAC
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