FC920296

Overview
NameFC920296
Unique NameFC920296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig641 contig Ccv1_Contig641:75..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 3.504e-85
Identity = 149/177 (84.18%), Postives = 166/177 (93.79%), Query Frame = 3
Query:  129 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWA*NLSYEDGV*LLEKCMRVLL 659
            QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEISDFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG+ YLGMVSMIGV+FED HVATGFGNHLARPILRDEW  +LS+EDGV LLEKCMRVLL
Sbjct:   22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLL 198          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_BOVIN (Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.119e-44
Identity = 86/180 (47.78%), Postives = 131/180 (72.78%), Query Frame = 3
Query:  123 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWA*NLSYEDGV*LLEKCMRVL 656
            PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL
Sbjct:   42 PITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVL 221          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_XENLA (Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 8.732e-44
Identity = 82/180 (45.56%), Postives = 133/180 (73.89%), Query Frame = 3
Query:  123 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWA*NLSYEDGV*LLEKCMRVL 656
            P++ T  P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  + ++++LGASG+ +D+Q L + +D++++ + +  DG++  PK +HS+LTRVMYNRR+K +PLWN++V+GG  NG+ +LG V  +GV +E   +ATGFG +LA+P+LR+  E    LS E+   L+++CM+VL
Sbjct:   20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYNGESFLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVL 199          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_HUMAN (Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4)

HSP 1 Score: 175.252 bits (443), Expect = 2.541e-43
Identity = 84/180 (46.67%), Postives = 131/180 (72.78%), Query Frame = 3
Query:  123 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWA*NLSYEDGV*LLEKCMRVL 656
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVL 221          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_MOUSE (Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.660e-43
Identity = 84/180 (46.67%), Postives = 130/180 (72.22%), Query Frame = 3
Query:  123 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWA*NLSYEDGV*LLEKCMRVL 656
            PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL
Sbjct:   42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVL 221          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_RAT (Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.392e-43
Identity = 85/183 (46.45%), Postives = 130/183 (71.04%), Query Frame = 3
Query:  114 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWA*NLSYEDGV*LLEKCMRVL 656
            P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + ++ DG+S  P+ +HS+LTR MY+RR+K +PLWN+ V+GG   G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL
Sbjct:   38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVL 220          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_DICDI (Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.919e-41
Identity = 81/179 (45.25%), Postives = 125/179 (69.83%), Query Frame = 3
Query:  129 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPIL---RDEWA*NLSYEDGV*LLEKCMRVL 656
            Q+T  P VTGTSV+A+KY  G++M +DM  SYGS  R+ S ER+K  G ++++GASGE SDFQ +   L++L+  D+  DDG+ L  +E+ +YL RV+YN+RN+ +PLWN+LV+ G + G+ +LG V ++G  ++D  + TG+G+H+A P+L   RDE   N++ E    L++ C+RVL
Sbjct:   35 QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGGKSFLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENP-NMNLEQAKQLIQDCLRVL 212          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_SCHPO (Probable proteasome subunit beta type-4 OS=Schizosaccharomyces pombe GN=SPBC577.10 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.461e-38
Identity = 81/185 (43.78%), Postives = 120/185 (64.86%), Query Frame = 3
Query:  123 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILR-----DEWA*NLSYEDGV*LLEKCMRVL 656
            PIQRT  P VTG+SV+ALK+ DG+++AAD   SYGS  R+  VER+  +G ++++GA G+ISD+Q++ R L++L + +  + DG +L P  +H YL++V+Y RRNK DP WN L++ GV  +N + Y+    + G  +    +ATGF  HLA P+LR     D W   LS E     +++CMRVL
Sbjct:   32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRWK-TLSKESARATIDECMRVL 215          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_YEAST (Proteasome component PRE4 OS=Saccharomyces cerevisiae GN=PRE4 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.493e-35
Identity = 73/160 (45.62%), Postives = 112/160 (70.00%), Query Frame = 3
Query:  123 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELI---LYDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILR 587
            P+  TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+ISD Q + R L +L+    YDN + D   +L P  +  YL  VMY RR+K +PLWN++++ GV+ NG ++L  V+++GV +    +ATGFG H+A P+LR
Sbjct:   30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLR 189          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_DROME (Proteasome subunit beta type-4 OS=Drosophila melanogaster GN=Prosbeta7 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.310e-33
Identity = 72/171 (42.11%), Postives = 112/171 (65.50%), Query Frame = 3
Query:  153 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWA*NLSYE--DGV*LLEKCMRVL 656
            TGTSV+ ++Y  G+++AAD   SYGS  RY+++ER+  + K+ LLG SG+ +D Q + RN+D+ ++ D   DD   + PK L S++TRV+YNRR++ +PL+  +V+GGV N G  YL  V + G ++ED  VATGF  HLA P++R++   +  +   +   L+  CM VL
Sbjct:   56 TGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVL 226          
The following BLAST results are available for this feature:
BLAST of FC920296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSB4_ARATH3.504e-8584.18Proteasome subunit beta type-4 OS=Arabidopsis thal... [more]
PSB4_BOVIN5.119e-4447.78Proteasome subunit beta type-4 OS=Bos taurus GN=PS... [more]
PSB4_XENLA8.732e-4445.56Proteasome subunit beta type-4 (Fragment) OS=Xenop... [more]
PSB4_HUMAN2.541e-4346.67Proteasome subunit beta type-4 OS=Homo sapiens GN=... [more]
PSB4_MOUSE5.660e-4346.67Proteasome subunit beta type-4 OS=Mus musculus GN=... [more]
PSB4_RAT7.392e-4346.45Proteasome subunit beta type-4 OS=Rattus norvegicu... [more]
PSB4_DICDI6.919e-4145.25Proteasome subunit beta type-4 OS=Dictyostelium di... [more]
PSB4_SCHPO2.461e-3843.78Probable proteasome subunit beta type-4 OS=Schizos... [more]
PSB4_YEAST1.493e-3545.63Proteasome component PRE4 OS=Saccharomyces cerevis... [more]
PSB4_DROME5.310e-3342.11Proteasome subunit beta type-4 OS=Drosophila melan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006D12EF RVDevelop1 Citrus clementina cDNA clone C32006D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920296 ID=FC920296; Name=FC920296; organism=Citrus clementina; type=EST; length=661bp
GGAAGTTAGATCGTGAAGCCTCAGCTGATCAGCTTTGCTATTTACTGAGA
AAGTGAATCAAATCTCAAAACGAATTAATGGAATCGATCCAAGCCAAACA
AGGACTTGTCGGCCCTAACGACCCCATTCAAAGAACCCAGTTACCATATG
TGACTGGTACATCTGTTGTTGCGCTGAAGTACAAAGATGGCATATTAATG
GCTGCTGACATGGGAGGTTCCTATGGGTCAACAATCCGATACAAGAGTGT
GGAACGGATTAAACCTATTGGAAAGCATTCTCTACTGGGTGCCAGTGGAG
AAATAAGTGATTTTCAGGAGCTTTTGCGTAATCTTGATGAGCTTATACTT
TATGACAATATGTGGGATGATGGGAACTCTTTGGGGCCAAAAGAGTTGCA
CAGCTATTTGACCAGGGTCATGTATAACAGGCGTAACAAGTTTGATCCAT
TGTGGAACTCTCTTGTGCTTGGTGGAGTGAAAAATGGACAGAAATATCTT
GGCATGGTATCAATGATAGGAGTGAACTTTGAGGACAGCCATGTTGCAAC
TGGGTTTGGGAATCATCTTGCAAGGCCAATTCTTCGTGATGAATGGGCAT
GAAACTTGAGTTATGAAGATGGCGTTTAGTTGCTGGAAAAGTGCATGCGT
GTGCTCCTGTA
back to top