FC920302

Overview
NameFC920302
Unique NameFC920302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14117 contig Ccv1_Contig14117:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_TOBAC (Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.572e-64
Identity = 121/137 (88.32%), Postives = 129/137 (94.16%), Query Frame = 2
Query:  239 MAARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            MAARK GL+ALFDVDGTLTAPRK  TP+ML+FM+ELRKVVTVGVVGGSDL KISEQLGKTV  +YDY FSENGLVAHKDGKLIGTQSLKSFLG EKLKEF+NFTLHYIADLDIPIKRGTFIEFRSGMLN+SPIGR+C
Sbjct:    1 MAARKPGLIALFDVDGTLTAPRKEVTPEMLKFMKELRKVVTVGVVGGSDLVKISEQLGKTVTTDYDYCFSENGLVAHKDGKLIGTQSLKSFLGDEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRDC 137          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_SOYBN (Phosphomannomutase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.731e-64
Identity = 120/137 (87.59%), Postives = 129/137 (94.16%), Query Frame = 2
Query:  239 MAARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            MAAR+ GL+ALFDVDGTLTAPRK  TP+ML FM+ELRKVVTVGVVGGSDL KISEQLG TV ++YDYVFSENGLVAHK+GKLIGTQSLKSFLG EKLKEF+NFTLHYIADLDIPIKRGTFIEFRSGMLN+SPIGRNC
Sbjct:    1 MAARRPGLIALFDVDGTLTAPRKVVTPEMLTFMQELRKVVTVGVVGGSDLIKISEQLGSTVTNDYDYVFSENGLVAHKEGKLIGTQSLKSFLGEEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNC 137          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_SOLLC (Phosphomannomutase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.731e-64
Identity = 121/137 (88.32%), Postives = 129/137 (94.16%), Query Frame = 2
Query:  239 MAARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            MAARK GL+ALFDVDGTLTAPRK +TPQML+FM+ELRKVVTVGVVGGSDL KISEQLG TV ++YDYVFSENGLVAHKDGKLIG QSLKS LG EKLKEF+NFTLHYIADLDIPIKRGTFIEFRSGMLN+SPIGRNC
Sbjct:    1 MAARKAGLIALFDVDGTLTAPRKESTPQMLKFMQELRKVVTVGVVGGSDLVKISEQLGNTVTNDYDYVFSENGLVAHKDGKLIGKQSLKSHLGDEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNC 137          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_WHEAT (Phosphomannomutase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.725e-60
Identity = 115/137 (83.94%), Postives = 128/137 (93.43%), Query Frame = 2
Query:  242 AARKQ-GLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            AARK  G+LALFDVDGTLTAPRK  TP+MLEFM+ LR+ VTVGVVGGSDL KISEQLGK+VI +YDYVFSENGLVAHKDGKLIGTQSLK++LG ++LKEF+NFTLHYIADLDIPIKRGTFIEFRSGM+N+SPIGRNC
Sbjct:    3 AARKDAGVLALFDVDGTLTAPRKEVTPEMLEFMKRLRENVTVGVVGGSDLVKISEQLGKSVITDYDYVFSENGLVAHKDGKLIGTQSLKTYLGDDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNC 139          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_ARATH (Phosphomannomutase OS=Arabidopsis thaliana GN=PMM PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.557e-60
Identity = 112/137 (81.75%), Postives = 126/137 (91.97%), Query Frame = 2
Query:  239 MAARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            MAA+  G++ALFDVDGTLTAPRK ATP++L+F+RELRKVVT+GVVGGSDLSKISEQLGKTV ++YDY FSENGLVAHKDGK IG QSLK  LG +KLKE +NFTLHYIADLDIPIKRGTFIEFR+GMLN+SPIGRNC
Sbjct:    1 MAAKIPGVIALFDVDGTLTAPRKEATPELLDFIRELRKVVTIGVVGGSDLSKISEQLGKTVTNDYDYCFSENGLVAHKDGKSIGIQSLKLHLGDDKLKELINFTLHYIADLDIPIKRGTFIEFRNGMLNVSPIGRNC 137          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_ORYSJ (Phosphomannomutase OS=Oryza sativa subsp. japonica GN=PMM PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 8.563e-60
Identity = 114/138 (82.61%), Postives = 128/138 (92.75%), Query Frame = 2
Query:  239 MAARKQ-GLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            MAARK  G+LALFDVDGTLTAPRK  TP+ML+FM++LR+ VTVGVVGGSDL KISEQLGK+V  +YDY FSENGLVAHK+G+LIGTQSLKSFLG ++LKEF+NFTLHYIADLDIPIKRGTFIEFRSGMLN+SPIGRNC
Sbjct:    1 MAARKNAGVLALFDVDGTLTAPRKVVTPEMLQFMKQLREHVTVGVVGGSDLVKISEQLGKSVTTDYDYCFSENGLVAHKNGELIGTQSLKSFLGDDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNC 138          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_ORYSI (Phosphomannomutase OS=Oryza sativa subsp. indica GN=PMM PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.563e-60
Identity = 114/138 (82.61%), Postives = 128/138 (92.75%), Query Frame = 2
Query:  239 MAARKQ-GLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            MAARK  G+LALFDVDGTLTAPRK  TP+ML+FM++LR+ VTVGVVGGSDL KISEQLGK+V  +YDY FSENGLVAHK+G+LIGTQSLKSFLG ++LKEF+NFTLHYIADLDIPIKRGTFIEFRSGMLN+SPIGRNC
Sbjct:    1 MAARKNAGVLALFDVDGTLTAPRKVVTPEMLQFMKQLREHVTVGVVGGSDLVKISEQLGKSVTTDYDYCFSENGLVAHKNGELIGTQSLKSFLGDDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNC 138          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM1_DICDI (Phosphomannomutase 1 OS=Dictyostelium discoideum GN=pmmA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.038e-46
Identity = 84/129 (65.12%), Postives = 106/129 (82.17%), Query Frame = 2
Query:  263 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            + LFDVDGTLT PR   TP+M +F+  LR  V +GVVGGSD++KI EQLG+  I+E+ Y+F+ENGL++ KDG L+ TQ +K FLG E +K+F+NF LHYIADLDIPIKRGTF+EFR+GM+NISPIGRNC
Sbjct:    8 ICLFDVDGTLTKPRNVITPEMKDFLAGLRTKVELGVVGGSDINKIKEQLGENCINEFHYLFAENGLLSFKDGSLLATQDIKKFLGEENIKKFINFVLHYIADLDIPIKRGTFVEFRNGMINISPIGRNC 136          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM2_DICDI (Phosphomannomutase 2 OS=Dictyostelium discoideum GN=pmmB PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.733e-44
Identity = 81/135 (60.00%), Postives = 107/135 (79.26%), Query Frame = 2
Query:  245 ARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            ++ +  + LFDVD TLT PR A T +M E +  LR  + +GVVGGS+ +KI EQLG+  I+++DYVF+ENGL+A+KDG L+  Q +K +LG E +K+F+NF LHY+ADLDIPIKRGTF+EFR+GMLNISPIGRNC
Sbjct:    2 SQNKNTICLFDVDDTLTKPRNAITNEMKELLASLRTKIKIGVVGGSNFNKIKEQLGENFINDFDYVFAENGLIAYKDGSLLEIQDIKKYLGEENIKKFINFVLHYVADLDIPIKRGTFVEFRNGMLNISPIGRNC 136          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_SCHPO (Phosphomannomutase OS=Schizosaccharomyces pombe GN=pmm1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.519e-40
Identity = 81/131 (61.83%), Postives = 104/131 (79.39%), Query Frame = 2
Query:  263 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQL---GKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRN 646
            L LFDVDGTLT  R + +P+MLE ++ LRKVV +G VGGSDLSK  EQL   G+ VID +DY F+ENGL A++ G+ + +QS  ++LG EK ++ +NF LHYIADLDIP+KRGTFIEFR+GM+NISP+GRN
Sbjct:   15 LVLFDVDGTLTPARLSVSPEMLETLQNLRKVVAIGFVGGSDLSKQQEQLSVNGENVIDSFDYAFAENGLTAYRYGQQLASQSFIAWLGEEKYQKLVNFCLHYIADLDIPVKRGTFIEFRNGMINISPVGRN 145          
The following BLAST results are available for this feature:
BLAST of FC920302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMM_TOBAC2.572e-6488.32Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1[more]
PMM_SOYBN5.731e-6487.59Phosphomannomutase OS=Glycine max PE=2 SV=1[more]
PMM_SOLLC5.731e-6488.32Phosphomannomutase OS=Solanum lycopersicum PE=2 SV... [more]
PMM_WHEAT1.725e-6083.94Phosphomannomutase OS=Triticum aestivum PE=2 SV=1[more]
PMM_ARATH6.557e-6081.75Phosphomannomutase OS=Arabidopsis thaliana GN=PMM ... [more]
PMM_ORYSJ8.563e-6082.61Phosphomannomutase OS=Oryza sativa subsp. japonica... [more]
PMM_ORYSI8.563e-6082.61Phosphomannomutase OS=Oryza sativa subsp. indica G... [more]
PMM1_DICDI7.038e-4665.12Phosphomannomutase 1 OS=Dictyostelium discoideum G... [more]
PMM2_DICDI1.733e-4460.00Phosphomannomutase 2 OS=Dictyostelium discoideum G... [more]
PMM_SCHPO1.519e-4061.83Phosphomannomutase OS=Schizosaccharomyces pombe GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006E10EF RVDevelop1 Citrus clementina cDNA clone C32006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920302 ID=FC920302; Name=FC920302; organism=Citrus clementina; type=EST; length=650bp
AGAGCCTGAAGCACGAGAGAAGAATCGATAAACCACTGAAGACTAATCTC
CAGATCTAACGTCACTCTCAAGTTACCCTCTAGAATGCAATTACTTCCCC
GTAACTTCCCAGCTTCCGCCATTCAAGATTTCAAGATCAAGATCTGCTTT
AAATTCCGCGTCCAAATTCAAAGCTCTGCGCTCTACTCACGCTATTCATT
CACTTCTATTCAGATAAATCTATACATTTCAAACTCCAATGGCTGCTAGG
AAGCAAGGTTTATTAGCTCTCTTTGATGTTGACGGAACTCTCACGGCTCC
GAGAAAGGCGGCAACACCACAAATGTTAGAGTTCATGCGGGAACTGAGAA
AGGTTGTTACAGTTGGAGTCGTCGGTGGATCTGATCTTTCTAAGATATCA
GAGCAGCTTGGGAAGACAGTTATTGATGAATACGATTATGTGTTTTCTGA
GAATGGTCTTGTGGCTCATAAGGATGGGAAATTAATTGGCACACAGAGCT
TGAAATCATTTCTTGGAGGCGAAAAGCTCAAGGAATTCCTAAATTTTACT
CTTCATTACATTGCTGACTTGGACATTCCAATTAAAAGGGGAACTTTCAT
TGAATTCCGAAGTGGGATGCTTAATATTTCACCAATTGGGCGAAACTGCA
back to top