FC920304

Overview
NameFC920304
Unique NameFC920304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5789 contig Ccv1_Contig5789:146..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920304 vs. ExPASy Swiss-Prot
Match: SIP12_ARATH (Probable aquaporin SIP1-2 OS=Arabidopsis thaliana GN=SIP1-2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.322e-20
Identity = 51/107 (47.66%), Postives = 61/107 (57.01%), Query Frame = 3
Query:    3 SALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGG-PSLQVDLHTGAIAE 320
            SA+G HG+ W P++I+T             G  LGGASFNP G AAFY  GV SDSL S+A+R P            IME +P KYK  +GG PSLQ   H GAI+E
Sbjct:   33 SAVGFHGITWAPLVISTLVVFVSISIFTVIGNVLGGASFNPCGNAAFYTAGVSSDSLFSLAIRSPAQAIGAAGGAITIMEMIPEKYKTRIGGKPSLQFGAHNGAISE 139          
BLAST of FC920304 vs. ExPASy Swiss-Prot
Match: SIP11_ARATH (Aquaporin SIP1-1 OS=Arabidopsis thaliana GN=SIP1-1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.961e-20
Identity = 50/106 (47.17%), Postives = 62/106 (58.49%), Query Frame = 3
Query:    3 SALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAE 320
            SA     + W P++I T+                G ASFNPTG+AAFY  GV  D+L S+A+R P            IME++P KYKHM+GGPSLQVD+HTGAIAE
Sbjct:   34 SAGDFQAITWAPLVILTSLIFVYVSIFTVI---FGSASFNPTGSAAFYVAGVPGDTLFSLAIRLPAQAIGAAGGALAIMEFIPEKYKHMIGGPSLQVDVHTGAIAE 136          
BLAST of FC920304 vs. ExPASy Swiss-Prot
Match: SIP12_MAIZE (Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 47/75 (62.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:   96 EALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAE 320
            +ALGGASFNPTG AAFYA GV S SL S+ALR P            I E MP +Y+HMLGGPSL+VD HTGA AE
Sbjct:   66 DALGGASFNPTGVAAFYAAGVTSPSLFSIALRLPAQAAGAVGGALAISELMPAQYRHMLGGPSLKVDPHTGAGAE 140          
BLAST of FC920304 vs. ExPASy Swiss-Prot
Match: SIP11_ORYSJ (Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica GN=SIP1-1 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 51/109 (46.79%), Postives = 62/109 (56.88%), Query Frame = 3
Query:    3 SALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGS---DSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAE 320
            S L +H  +   +L+T +             +ALGGASFNPT  AAF+A G+ S    SL  +ALRFP            I E MP +YKHMLGGPSL+VDLHTGA AE
Sbjct:   35 SYLRIHEGIHYALLVTVSLLSVLLFAFNLLCDALGGASFNPTALAAFHAAGLSSPRHSSLFPLALRFPAQAAGAVGGAMAISELMPEQYKHMLGGPSLKVDLHTGAAAE 143          
BLAST of FC920304 vs. ExPASy Swiss-Prot
Match: SIP11_MAIZE (Aquaporin SIP1-1 OS=Zea mays GN=SIP1-1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.840e-17
Identity = 48/95 (50.53%), Postives = 56/95 (58.95%), Query Frame = 3
Query:   39 MLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAEG 323
            +L+TT+              ALGGASFNPT  AA YA G+ S SL S+ALRFP            I E MP +YKH L GPSL+VD HTGA+AEG
Sbjct:   49 LLVTTSLLSVLLFTFDLLCGALGGASFNPTDFAASYAAGLDSPSLFSVALRFPAQAAGAVGGALAISELMPAQYKHTLAGPSLKVDPHTGALAEG 143          
The following BLAST results are available for this feature:
BLAST of FC920304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SIP12_ARATH2.322e-2047.66Probable aquaporin SIP1-2 OS=Arabidopsis thaliana ... [more]
SIP11_ARATH3.961e-2047.17Aquaporin SIP1-1 OS=Arabidopsis thaliana GN=SIP1-1... [more]
SIP12_MAIZE1.664e-1862.67Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1[more]
SIP11_ORYSJ6.324e-1846.79Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica G... [more]
SIP11_MAIZE1.840e-1750.53Aquaporin SIP1-1 OS=Zea mays GN=SIP1-1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC32006F04EF RVDevelop1 Citrus clementina cDNA clone C32006F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920304 ID=FC920304; Name=FC920304; organism=Citrus clementina; type=EST; length=389bp
CCTCCGCCCTTGGCGTTCACGGCCTTGTTTGGCCGCCCATGCTCATCACT
ACGGCCATTGTTTTTGTTTTCGTTTTTATTTTTAATATCATCGGTGAAGC
TCTTGGTGGAGCCAGTTTCAATCCCACTGGTACCGCTGCGTTTTACGCTG
TCGGTGTCGGCTCCGATAGCCTCCTCTCCATGGCCCTCCGCTTCCCAGCC
CAGGCAGCGGGTGCCGTGGGCGGTGCATTGGCCATCATGGAGTACATGCC
ACCAAAGTACAAGCACATGCTTGGGGGTCCTTCTTTGCAAGTTGACTTGC
ATACCGGAGCCATTGCTGAAGGGCTGTTGACTTTCCTTATTACTTTGCTG
TTCTTGTATTATGCTCCAGGGTCCTCAAAGAAATATTTT
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