FC920304
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920304 vs. ExPASy Swiss-Prot
Match: SIP12_ARATH (Probable aquaporin SIP1-2 OS=Arabidopsis thaliana GN=SIP1-2 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.322e-20 Identity = 51/107 (47.66%), Postives = 61/107 (57.01%), Query Frame = 3 Query: 3 SALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGG-PSLQVDLHTGAIAE 320 SA+G HG+ W P++I+T G LGGASFNP G AAFY GV SDSL S+A+R P IME +P KYK +GG PSLQ H GAI+E Sbjct: 33 SAVGFHGITWAPLVISTLVVFVSISIFTVIGNVLGGASFNPCGNAAFYTAGVSSDSLFSLAIRSPAQAIGAAGGAITIMEMIPEKYKTRIGGKPSLQFGAHNGAISE 139
BLAST of FC920304 vs. ExPASy Swiss-Prot
Match: SIP11_ARATH (Aquaporin SIP1-1 OS=Arabidopsis thaliana GN=SIP1-1 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 3.961e-20 Identity = 50/106 (47.17%), Postives = 62/106 (58.49%), Query Frame = 3 Query: 3 SALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAE 320 SA + W P++I T+ G ASFNPTG+AAFY GV D+L S+A+R P IME++P KYKHM+GGPSLQVD+HTGAIAE Sbjct: 34 SAGDFQAITWAPLVILTSLIFVYVSIFTVI---FGSASFNPTGSAAFYVAGVPGDTLFSLAIRLPAQAIGAAGGALAIMEFIPEKYKHMIGGPSLQVDVHTGAIAE 136
BLAST of FC920304 vs. ExPASy Swiss-Prot
Match: SIP12_MAIZE (Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18 Identity = 47/75 (62.67%), Postives = 52/75 (69.33%), Query Frame = 3 Query: 96 EALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAE 320 +ALGGASFNPTG AAFYA GV S SL S+ALR P I E MP +Y+HMLGGPSL+VD HTGA AE Sbjct: 66 DALGGASFNPTGVAAFYAAGVTSPSLFSIALRLPAQAAGAVGGALAISELMPAQYRHMLGGPSLKVDPHTGAGAE 140
BLAST of FC920304 vs. ExPASy Swiss-Prot
Match: SIP11_ORYSJ (Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica GN=SIP1-1 PE=2 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18 Identity = 51/109 (46.79%), Postives = 62/109 (56.88%), Query Frame = 3 Query: 3 SALGVHGLVWPPMLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGS---DSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAE 320 S L +H + +L+T + +ALGGASFNPT AAF+A G+ S SL +ALRFP I E MP +YKHMLGGPSL+VDLHTGA AE Sbjct: 35 SYLRIHEGIHYALLVTVSLLSVLLFAFNLLCDALGGASFNPTALAAFHAAGLSSPRHSSLFPLALRFPAQAAGAVGGAMAISELMPEQYKHMLGGPSLKVDLHTGAAAE 143
BLAST of FC920304 vs. ExPASy Swiss-Prot
Match: SIP11_MAIZE (Aquaporin SIP1-1 OS=Zea mays GN=SIP1-1 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.840e-17 Identity = 48/95 (50.53%), Postives = 56/95 (58.95%), Query Frame = 3 Query: 39 MLITTAXXXXXXXXXXXXGEALGGASFNPTGTAAFYAVGVGSDSLLSMALRFPXXXXXXXXXXXXIMEYMPPKYKHMLGGPSLQVDLHTGAIAEG 323 +L+TT+ ALGGASFNPT AA YA G+ S SL S+ALRFP I E MP +YKH L GPSL+VD HTGA+AEG Sbjct: 49 LLVTTSLLSVLLFTFDLLCGALGGASFNPTDFAASYAAGLDSPSLFSVALRFPAQAAGAVGGALAISELMPAQYKHTLAGPSLKVDPHTGALAEG 143 The following BLAST results are available for this feature:
BLAST of FC920304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920304 ID=FC920304; Name=FC920304; organism=Citrus clementina; type=EST; length=389bpback to top |