FC920309

Overview
NameFC920309
Unique NameFC920309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig571 contig Ccv1_Contig571:4..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 3.788e-99
Identity = 175/232 (75.43%), Postives = 200/232 (86.21%), Query Frame = 1
Query:   16 NPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNP-KMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            NP  Y ++   AGDAQARD LERV+ECLD++KCE FQD ITWARLKFEDYFSNRVKQL FTFPED+ TS+GAPFWSAPKRFP P++FSS+DPS L F++AA+ILRAETFGIPI +W   P K+ AEAVDKV+VPDF  K+  KI+TDEKAT+LS+ASVDDAAVI +LI KLE+  K LPSGF + PIQFEKDDDTN+HMD+IAG ANMRARNYSIPEVDKLKAKFIAGRIIP
Sbjct:  663 NPTTYISAARTAGDAQARDQLERVIECLDRDKCETFQDSITWARLKFEDYFSNRVKQLTFTFPEDSMTSSGAPFWSAPKRFPRPVEFSSSDPSQLSFILAAAILRAETFGIPISEWAKTPNKLAAEAVDKVIVPDFQPKQGVKIVTDEKATSLSSASVDDAAVIEELIAKLEEVSKTLPSGFHMNPIQFEKDDDTNFHMDVIAGFANMRARNYSIPEVDKLKAKFIAGRIIP 894          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.456e-98
Identity = 174/232 (75.00%), Postives = 199/232 (85.78%), Query Frame = 1
Query:   16 NPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNP-KMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            NP  Y ++   AGDAQARD LERV+ECLD++KCE FQD ITWARLKFEDYFSNRVKQL FTFPED+ TS+GAPFWSAPKRFP P++FSS+D S L F++AA+ILRAETFGIPIP+W   P K+ AEAVDKV+VPDF  K+  KI+T EKAT+LS+ASVDDAAVI +LI KLE+  K LPSGF + PIQFEKDDDTN+HMD+IAG ANMRARNYSIPEVDKLKAKFIAGRIIP
Sbjct:  663 NPTTYISAARTAGDAQARDQLERVIECLDRDKCETFQDSITWARLKFEDYFSNRVKQLTFTFPEDSMTSSGAPFWSAPKRFPRPVEFSSSDQSQLSFILAAAILRAETFGIPIPEWAKTPNKLAAEAVDKVIVPDFQPKQGVKIVTHEKATSLSSASVDDAAVIEELIAKLEEVSKTLPSGFHMNPIQFEKDDDTNFHMDVIAGFANMRARNYSIPEVDKLKAKFIAGRIIP 894          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.542e-92
Identity = 162/231 (70.13%), Postives = 192/231 (83.12%), Query Frame = 1
Query:   16 NPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            NP +Y  +M  AGDAQAR+ LERV ECL+K++C  F DCI+WARLKFEDYFSNRVKQL FTFPEDAATS GAPFWSAPKRFP  LQFS+AD SHL+F+M+ASILRAE+FG+ IP+W  +   LA+ V+K+ VP F  K+   I+TDEKA+ LS+ SVDD AVI DL+ KL++  K L  GF++KPIQFEKDDDTN+HMD+I+GLANMRARNYSIPEVDKLKAKFIAGRIIP
Sbjct:  666 NPAQYAAAMRKAGDAQARELLERVSECLNKDRCSTFDDCISWARLKFEDYFSNRVKQLTFTFPEDAATSMGAPFWSAPKRFPRALQFSAADQSHLNFIMSASILRAESFGVAIPEWAKDTSKLADVVNKIAVPTFEPKQGVNIVTDEKASNLSSTSVDDVAVIEDLLAKLQEYAKMLLPGFQMKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIP 896          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.758e-44
Identity = 97/234 (41.45%), Postives = 138/234 (58.97%), Query Frame = 1
Query:   22 VEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            VE T  +A     Q  + LE V   L  ++ + + DC+TWA   +   +SN ++QL+  FP D  TS+GAPFWS PKR PHPL F  ++P HL +V+AA+ L A+T+G+     + +   +A  +  V VP+F  K   KI   ++    + ASVDD+        +LE+ +  LPS     GF++ PI FEKDDDTN+HMD I   +N+RA NY IP  D+ K+K IAG+IIP
Sbjct:  673 VERTLRLAGT---QPLEVLEAVQRSLVLQRPQTWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVSNPLHLDYVIAAANLFAQTYGL---TGSQDRAAVATLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPEKLPGFKMYPIDFEKDDDTNFHMDFIVAASNLRAENYDIPPADRHKSKLIAGKIIP 892          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.728e-43
Identity = 97/234 (41.45%), Postives = 137/234 (58.55%), Query Frame = 1
Query:   22 VEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            VE T  +A     Q  + LE V   L  ++ + + DC+TWA   +   +SN ++QL+  FP D  TS+GAPFWS PKR PHPL F   +P HL +VMAA+ L A+T+G+     + +   +A  +  V VP+F  K   KI   ++    + ASVDD+        +LE+ +  LPS     GF++ PI FEKDDD+N+HMD I   +N+RA NY IP  D+ K+K IAG+IIP
Sbjct:  673 VERTLRLAGT---QPLEVLEAVQRSLVLQRPQTWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNPLHLDYVMAAANLFAQTYGL---TGSQDRAAVATFLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDIPSADRHKSKLIAGKIIP 892          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.948e-43
Identity = 97/234 (41.45%), Postives = 137/234 (58.55%), Query Frame = 1
Query:   22 VEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            VE T  +A     Q  + LE V   L  +  + + DC+TWA   +   +SN ++QL+  FP D  TS+GAPFWS PKR PHPL F  ++P HL +VMAA+ L A+T+G+     + +   +A  +  V VP+F  K   KI   ++    + ASVDD+        +LE+ +  LPS     GF++ PI FEKDDD+N+HMD I   +N+RA NY IP  D+ K+K IAG+IIP
Sbjct:  673 VERTLRLAGT---QPLEVLEAVQRSLVLQLPQSWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVSNPLHLDYVMAAANLFAQTYGLA---GSQDRAAVATLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDIPPADRHKSKLIAGKIIP 892          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.707e-41
Identity = 93/233 (39.91%), Postives = 137/233 (58.80%), Query Frame = 1
Query:   16 NPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKM--LAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            N VE T  +  +GD +    LE + + L   K   F+DCI WARL+FE  F++ +KQL+F FP+DA TS G PFWS  KR P PL+F   +  H HFV+A + LRA  +GI   D  + P +      +D +++P+F    + KI  ++     +  + + +  I+ L+  L     +  +GF+L+P+ FEKDDDTN+H++ I   +N RA+NY I   D+ K KFIAGRIIP
Sbjct:  639 NFVEQT--LKQSGDVKGV--LESISDSLSS-KPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPD--PSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIP 864          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.707e-41
Identity = 94/234 (40.17%), Postives = 134/234 (57.26%), Query Frame = 1
Query:   22 VEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            VE T  +A     Q  + LE V   L  ++ + + DC+TWA   +   + N ++QL+  FP D  TS+GAPFWS PKR PHPL F   +  HL +VMAA+ L A+T+G+     + +   +A  +  V VP+F  K   KI   ++    + ASVDD+        +LE+ +  LPS     GF++ PI FEKDDD+N+HMD I   +N+RA NY I   D+ K+K IAG+IIP
Sbjct:  673 VERTLRLAGT---QPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL---TGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIP 892          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.707e-41
Identity = 94/234 (40.17%), Postives = 134/234 (57.26%), Query Frame = 1
Query:   22 VEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            VE T  +A     Q  + LE V   L  ++ + + DC+TWA   +   + N ++QL+  FP D  TS+GAPFWS PKR PHPL F   +  HL +VMAA+ L A+T+G+     + +   +A  +  V VP+F  K   KI   ++    + ASVDD+        +LE+ +  LPS     GF++ PI FEKDDD+N+HMD I   +N+RA NY I   D+ K+K IAG+IIP
Sbjct:  673 VERTLRLAGT---QPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL---TGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIP 892          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA1_DICDI (Ubiquitin-like modifier-activating enzyme 1 OS=Dictyostelium discoideum GN=uba1 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.147e-41
Identity = 91/204 (44.61%), Postives = 123/204 (60.29%), Query Frame = 1
Query:  121 FQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQC---RKNLP-----SGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            F  CI WARLKFE+YF+N ++QL++ FP+D  T+TG PFWS PKR P PL+F   +P HL F++AA+ LRA  +GI       N +++ +    V+VPDF  KK  KI T E     S+ +        D     +QC      LP     +G+++  IQFEKDDDTN+H+D I   +N+RA NY+I   DK K K IAG+IIP
Sbjct:  662 FNQCIAWARLKFEEYFNNNIEQLLYNFPKDMVTTTGTPFWSGPKRAPTPLKFDVENPLHLEFIVAAANLRAFNYGIKA---ETNIEVIQKQAANVIVPDFTPKK-VKIQTSENEPAPSSNTQQAGGDAED-----DQCDTILSQLPQPSEMAGYKINSIQFEKDDDTNHHIDFITATSNLRATNYAISPADKHKTKGIAGKIIP 856          
The following BLAST results are available for this feature:
BLAST of FC920309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBE12_WHEAT3.788e-9975.43Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT2.456e-9875.00Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE13_WHEAT1.542e-9270.13Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBA1_BOVIN7.758e-4441.45Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1_HUMAN1.728e-4341.45Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_RABIT2.948e-4341.45Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1_YEAST4.707e-4139.91Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]
UBA1_RAT4.707e-4140.17Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_MOUSE4.707e-4140.17Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_DICDI6.147e-4144.61Ubiquitin-like modifier-activating enzyme 1 OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionC32006F11EF RVDevelop1 Citrus clementina cDNA clone C32006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920309 ID=FC920309; Name=FC920309; organism=Citrus clementina; type=EST; length=708bp
GAATGCCTATCTATCAACCCAGTTGAATACACTACTTCTATGGCTAATGC
AGGTGATGCTCAAGCTAGAGATAACTTGGAACGTGTCCTTGAGTGCCTTG
ACAAGGAGAAGTGCGAAATATTCCAGGACTGCATCACCTGGGCTCGTCTC
AAGTTTGAAGATTATTTTTCCAACCGAGTGAAGCAGTTGATCTTTACATT
TCCTGAAGATGCTGCTACCAGTACTGGGGCTCCATTCTGGTCTGCCCCAA
AGCGATTCCCTCATCCTCTTCAGTTCTCATCTGCGGATCCCAGTCACCTA
CACTTTGTTATGGCAGCCTCCATACTACGAGCAGAGACATTTGGCATCCC
TATTCCTGATTGGACCAATAATCCTAAGATGTTGGCTGAGGCTGTTGACA
AAGTGATGGTACCAGATTTTCTGCTAAAGAAAGATGCAAAAATCTTAACG
GATGAGAAGGCTACTACTCTCTCCACTGCTTCTGTGGATGATGCAGCGGT
AATTAATGATCTGATTATAAAGTTAGAGCAGTGCAGAAAGAACCTGCCAT
CTGGGTTCAGGTTGAAACCAATTCAGTTCGAAAAGGATGATGACACAAAC
TACCACATGGATATGATAGCTGGGCTTGCTAACATGAGGGCAAGGAACTA
TAGCATTCCTGAGGTCGACAAGCTGAAAGCCAAGTTTATTGCTGGAAGGA
TCATTCCA
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