FC920328

Overview
NameFC920328
Unique NameFC920328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14121 contig Ccv1_Contig14121:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYG_TOBAC (Pyruvate kinase isozyme G, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 3
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKEYNAQ 704
            RKTKIVCTIGPST++REMIWKLAEAGMNVARLNMSHGDHASHQ+ IDLVKEYNAQ
Sbjct:   91 RKTKIVCTIGPSTSSREMIWKLAEAGMNVARLNMSHGDHASHQRTIDLVKEYNAQ 145          
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_CHLTR (Pyruvate kinase OS=Chlamydia trachomatis GN=pyk PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:  543 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            +TKI+CTIGP+TNT EM+ KL +AGMNVARLN SHG H SH + I ++KE
Sbjct:    4 RTKIICTIGPATNTPEMLEKLLDAGMNVARLNFSHGTHESHGRTIAILKE 53          
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_CHLMU (Pyruvate kinase OS=Chlamydia muridarum GN=pyk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:  543 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            +TKI+CTIGP+TNT EM+ KL +AGMNVARLN SHG H SH + I ++KE
Sbjct:    4 RTKIICTIGPATNTPEMLEKLLDAGMNVARLNFSHGTHESHGRTIAILKE 53          
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAS1 (Pyruvate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=pyk PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 3
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EM+ KL +AGMNVARLN SHGD A H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMLEKLIKAGMNVARLNFSHGDQAEHKARIDTIRK 52          
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_CHLPN (Pyruvate kinase OS=Chlamydia pneumoniae GN=pyk PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 3
Query:  543 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKEYNAQ 704
            +TKI+CTIGP+TN+ EM+ KL +AGMNVARLN SHG H +H + I  +KE   Q
Sbjct:    4 RTKIICTIGPATNSPEMLAKLLDAGMNVARLNFSHGSHETHGQAIGFLKELREQ 57          
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAHJ (Pyruvate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pyk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EM+ KL +AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMLEKLMKAGMNVARLNFSHGSHEEHKARIDTIRK 52          
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAAW (Pyruvate kinase OS=Staphylococcus aureus (strain MW2) GN=pyk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EMI KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRK 52          
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAAS (Pyruvate kinase OS=Staphylococcus aureus (strain MSSA476) GN=pyk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EMI KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRK 52          
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAAR (Pyruvate kinase OS=Staphylococcus aureus (strain MRSA252) GN=pyk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EMI KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRK 52          
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAAN (Pyruvate kinase OS=Staphylococcus aureus (strain N315) GN=pyk PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EMI KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRK 52          
The following BLAST results are available for this feature:
BLAST of FC920328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
KPYG_TOBAC2.552e-2392.73Pyruvate kinase isozyme G, chloroplastic OS=Nicoti... [more]
KPYK_CHLTR1.552e-1266.00Pyruvate kinase OS=Chlamydia trachomatis GN=pyk PE... [more]
KPYK_CHLMU1.552e-1266.00Pyruvate kinase OS=Chlamydia muridarum GN=pyk PE=3... [more]
KPYK_STAS14.516e-1262.75Pyruvate kinase OS=Staphylococcus saprophyticus su... [more]
KPYK_CHLPN5.898e-1259.26Pyruvate kinase OS=Chlamydia pneumoniae GN=pyk PE=... [more]
KPYK_STAHJ1.006e-1160.78Pyruvate kinase OS=Staphylococcus haemolyticus (st... [more]
KPYK_STAAW1.006e-1162.75Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAS1.006e-1162.75Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAR1.006e-1162.75Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAN1.006e-1162.75Pyruvate kinase OS=Staphylococcus aureus (strain N... [more]

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Properties
Property NameValue
Genbank descriptionC32006H09EF RVDevelop1 Citrus clementina cDNA clone C32006H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920328 ID=FC920328; Name=FC920328; organism=Citrus clementina; type=EST; length=706bp
CTTGGCCGGGGATACGAACTAAGCGCCTCTTTCTCTTTCTCTCGCCTACC
TTGTCCCTCCCTCTACCCGTCCGCCAAATTTAGCGGCGATTTCTCCAAAC
TCTGAATCAAAATTAAAACTATTACACACTCTCTCTCACTTCAAATCCTC
AAATCAGAACTCTCCGTTCACATTCTCTCTCAGCAATTCATTTTTCATTT
TGCTTTTCTTCTCTAGCAATGGCTCAGGTAGTGGCTACACGATCGATTCA
GAGTTCGTTTATGTGTCCTGCCTCGGGATCCGCGCAAGAGCGGGCTAGCG
AGAAGCTAAAGCCTTCTAGCTTCGCTTCGACCGTGCTGTCACGTGAGGAG
AAGAAGAGAGTTACACTTGTTCGCAAAAGCACTAAAATCTCTGCTCAGAA
AGCCACACGTGTCGAACCTGAGGTTGTCCCTGTGTCTCCTGAGGACGTAC
CTAAGAGAGATGGGGAATTTCAGCATTTTGGGGGACTTCAGCAATTAGGT
GACACATCAGTGAGCATGTGGACCAAGCCAACTGTTAGACGCAAGACCAA
GATTGTGTGCACCATTGGTCCTTCGACTAACACAAGGGAAATGATATGGA
AGCTGGCCGAGGCTGGAATGAATGTTGCTCGTTTGAACATGTCCCATGGA
GACCACGCTTCTCATCAAAAAGNTATTGATTTGGTTAAAGAATATAATGC
ACAATC
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