FC920333

Overview
NameFC920333
Unique NameFC920333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14122 contig Ccv1_Contig14122:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_BRAOG (Putative lactoylglutathione lyase OS=Brassica oleracea var. gemmifera PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.027e-91
Identity = 161/207 (77.78%), Postives = 182/207 (87.92%), Query Frame = 3
Query:  117 NAELLEWPKKDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYAVTE 737
            NA+L+EWPKKDKRR LH VYRVGDLDRTI++YTECFGM++LRKRDVPEEKYSNAFLGFGPE S FVVELTYNYGV+SYDIGTGFGH AI+T+DV KMVE +RAKGGNVTREPGP+KG  +  AFVKDPDGY FELIQRGPTPEPLCQVMLRVGDL R++KF EKALGM+LLR I+ PE    + M+GYAEE ++ VLEL Y+Y VTE
Sbjct:    4 NADLVEWPKKDKRRFLHVVYRVGDLDRTIQFYTECFGMKVLRKRDVPEEKYSNAFLGFGPETSNFVVELTYNYGVSSYDIGTGFGHFAISTQDVSKMVEAVRAKGGNVTREPGPVKGGGSVIAFVKDPDGYTFELIQRGPTPEPLCQVMLRVGDLDRAVKFMEKALGMRLLRRIERPEYN-TIGMMGYAEEYESIVLELTYNYGVTE 209          

HSP 2 Score: 100.523 bits (249), Expect = 9.787e-21
Identity = 52/121 (42.98%), Postives = 70/121 (57.85%), Query Frame = 3
Query:  159 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIR----AKGGNVTREPGPLKGMTTHFAFVKDPDGY 509
            L   + RVGDLDR +K+  +  GM LLR+ + PE   +   +G+  E    V+ELTYNYGVT Y  G  +  +AI T+DVYK  E ++      GG +TRE GPL G+ T      DPDG+
Sbjct:  148 LCQVMLRVGDLDRAVKFMEKALGMRLLRRIERPEYN-TIGMMGYAEEYESIVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKSAEVVKIVNQELGGKITREAGPLPGLGTKIVSFLDPDGW 267          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_ORYSJ (Lactoylglutathione lyase OS=Oryza sativa subsp. japonica GN=GLX-I PE=1 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 2.210e-89
Identity = 162/216 (75.00%), Postives = 182/216 (84.26%), Query Frame = 3
Query:   93 AEASPAVANAELLEWPKKDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAK-GGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYAVTE 737
            AE SP V    +LEWPKKDK+RLLHAVYRVGDLDRTIK YTECFGM+LLRKRDVPEEKY+NAFLGFGPE + F +ELTYNYGV  YDIG GFGH AIATEDVYK+ E I++     +TREPGP+KG +T  AF +DPDGY+FELIQRGPTPEPLCQVMLRVGDL RSIKFYEKALGMKLLR  D P+ K  +AMLGYA+ED+TTV+EL Y+Y VTE
Sbjct:    7 AEKSPEV----VLEWPKKDKKRLLHAVYRVGDLDRTIKCYTECFGMKLLRKRDVPEEKYTNAFLGFGPEDTNFALELTYNYGVDKYDIGAGFGHFAIATEDVYKLAEKIKSSCCCKITREPGPVKGGSTVIAFAQDPDGYMFELIQRGPTPEPLCQVMLRVGDLDRSIKFYEKALGMKLLRKKDVPDYKYTIAMLGYADEDKTTVIELTYNYGVTE 218          

HSP 2 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 62/126 (49.21%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  159 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENI----RAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 524
            L   + RVGDLDR+IK+Y +  GM+LLRK+DVP+ KY+ A LG+  E    V+ELTYNYGVT Y  G  +  +AI TEDVYK  E +    +  GG + R+PGPL G+ T  A   DPDG+   L+
Sbjct:  156 LCQVMLRVGDLDRSIKFYEKALGMKLLRKKDVPDYKYTIAMLGYADEDKTTVIELTYNYGVTEYTKGNAYAQVAIGTEDVYKSAEAVELVTKELGGKILRQPGPLPGLNTKIASFLDPDGWKVVLV 281          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_VIBPA (Probable lactoylglutathione lyase OS=Vibrio parahaemolyticus GN=gloA PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.739e-39
Identity = 74/124 (59.68%), Postives = 95/124 (76.61%), Query Frame = 3
Query:  156 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 527
            R+LH + RVGDLD++IK+YTE  GM+LLR  +  E +Y+ AF+G+G E    V+ELTYN+G T YD+GT FGH+AI  +D+Y   + I+A GGNVTRE GP+KG TTH AFVKDPDGY+ ELIQ
Sbjct:    5 RILHTMLRVGDLDKSIKFYTEVMGMQLLRTNENKEYEYTLAFVGYGDESQGAVIELTYNWGKTEYDLGTAFGHIAIGVDDIYATCDAIKAAGGNVTREAGPVKGGTTHIAFVKDPDGYMIELIQ 128          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_VIBCH (Probable lactoylglutathione lyase OS=Vibrio cholerae GN=gloA PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.166e-38
Identity = 72/124 (58.06%), Postives = 93/124 (75.00%), Query Frame = 3
Query:  156 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 527
            R+LH + RVGDLD++I++YT+  GM LLRK +  E KY+ AFLG+G E    V+ELTYN+GV  Y+ G  +GH+AI  +D+Y   + I+A GG VTREPGP+KG TTH AFVKDPDGY+ ELIQ
Sbjct:    5 RILHTMLRVGDLDKSIEFYTQVMGMSLLRKNENTEYKYTLAFLGYGDESQGAVIELTYNWGVADYEKGNAYGHIAIGVDDIYATCDTIKAAGGIVTREPGPVKGGTTHIAFVKDPDGYMIELIQ 128          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_SHIFL (Lactoylglutathione lyase OS=Shigella flexneri GN=gloA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 70/124 (56.45%), Postives = 92/124 (74.19%), Query Frame = 3
Query:  156 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 527
            RLLH + RVGDL R+I +YT+  GM+LLR  + PE KYS AF+G+GPE    V+ELTYN+GV  Y++GT +GH+A++ ++  +  E IR  GGNVTRE GP+KG TT  AFV+DPDGY  ELI+
Sbjct:    2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIE 125          

HSP 2 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 3
Query:  549 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYAV 731
            L   MLRVGDL RSI FY K LGMKLLRT ++PE K +LA +GY  E +  V+EL Y++ V
Sbjct:    3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGV 63          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_ECOLI (Lactoylglutathione lyase OS=Escherichia coli (strain K12) GN=gloA PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 70/124 (56.45%), Postives = 92/124 (74.19%), Query Frame = 3
Query:  156 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 527
            RLLH + RVGDL R+I +YT+  GM+LLR  + PE KYS AF+G+GPE    V+ELTYN+GV  Y++GT +GH+A++ ++  +  E IR  GGNVTRE GP+KG TT  AFV+DPDGY  ELI+
Sbjct:    2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIE 125          

HSP 2 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 3
Query:  549 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYAV 731
            L   MLRVGDL RSI FY K LGMKLLRT ++PE K +LA +GY  E +  V+EL Y++ V
Sbjct:    3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGV 63          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_ECO57 (Lactoylglutathione lyase OS=Escherichia coli O157:H7 GN=gloA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 70/124 (56.45%), Postives = 92/124 (74.19%), Query Frame = 3
Query:  156 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 527
            RLLH + RVGDL R+I +YT+  GM+LLR  + PE KYS AF+G+GPE    V+ELTYN+GV  Y++GT +GH+A++ ++  +  E IR  GGNVTRE GP+KG TT  AFV+DPDGY  ELI+
Sbjct:    2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIE 125          

HSP 2 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 3
Query:  549 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYAV 731
            L   MLRVGDL RSI FY K LGMKLLRT ++PE K +LA +GY  E +  V+EL Y++ V
Sbjct:    3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGV 63          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_SALTY (Lactoylglutathione lyase OS=Salmonella typhimurium GN=gloA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.400e-35
Identity = 70/124 (56.45%), Postives = 91/124 (73.39%), Query Frame = 3
Query:  156 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 527
            RLLH + RVGDL R+I +YT   GM+LLR  + PE KYS AF+G+GPE    V+ELTYN+GV SYD+G  +GH+A++ ++  +  E IR  GGNVTRE GP+KG +T  AFV+DPDGY  ELI+
Sbjct:    2 RLLHTMLRVGDLQRSIAFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVESYDMGNAYGHIALSVDNAAEACERIRQNGGNVTREAGPVKGGSTIIAFVEDPDGYKIELIE 125          

HSP 2 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 3
Query:  549 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYAV 731
            L   MLRVGDL RSI FY   LGMKLLRT ++PE K +LA +GY  E +  V+EL Y++ V
Sbjct:    3 LLHTMLRVGDLQRSIAFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGV 63          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_SALTI (Lactoylglutathione lyase OS=Salmonella typhi GN=gloA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.400e-35
Identity = 70/124 (56.45%), Postives = 91/124 (73.39%), Query Frame = 3
Query:  156 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 527
            RLLH + RVGDL R+I +YT   GM+LLR  + PE KYS AF+G+GPE    V+ELTYN+GV SYD+G  +GH+A++ ++  +  E IR  GGNVTRE GP+KG +T  AFV+DPDGY  ELI+
Sbjct:    2 RLLHTMLRVGDLQRSIAFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVESYDMGNAYGHIALSVDNAAEACERIRQNGGNVTREAGPVKGGSTIIAFVEDPDGYKIELIE 125          

HSP 2 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 3
Query:  549 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYAV 731
            L   MLRVGDL RSI FY   LGMKLLRT ++PE K +LA +GY  E +  V+EL Y++ V
Sbjct:    3 LLHTMLRVGDLQRSIAFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGV 63          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_SYNY3 (Probable lactoylglutathione lyase OS=Synechocystis sp. (strain PCC 6803) GN=gloA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 3
Query:  159 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 527
            LLH + RVGDLD+++++Y +  GM LLRK+D P  +++ AF+G+G E    V+ELT+N+G   YD+G GFGH+A+  ED+Y   + IR KGG V REPGP+K  TT  AFV+DPDGY  ELIQ
Sbjct:    3 LLHTMIRVGDLDKSLQFYCDILGMNLLRKKDYPSGEFTLAFVGYGKESENAVIELTHNWGTDKYDLGNGFGHIALGVEDIYSTCDKIRDKGGKVVREPGPMKHGTTVIAFVEDPDGYKIELIQ 125          
The following BLAST results are available for this feature:
BLAST of FC920333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
LGUL_BRAOG4.027e-9177.78Putative lactoylglutathione lyase OS=Brassica oler... [more]
LGUL_ORYSJ2.210e-8975.00Lactoylglutathione lyase OS=Oryza sativa subsp. ja... [more]
LGUL_VIBPA2.739e-3959.68Probable lactoylglutathione lyase OS=Vibrio paraha... [more]
LGUL_VIBCH5.166e-3858.06Probable lactoylglutathione lyase OS=Vibrio choler... [more]
LGUL_SHIFL1.077e-3556.45Lactoylglutathione lyase OS=Shigella flexneri GN=g... [more]
LGUL_ECOLI1.077e-3556.45Lactoylglutathione lyase OS=Escherichia coli (stra... [more]
LGUL_ECO571.077e-3556.45Lactoylglutathione lyase OS=Escherichia coli O157:... [more]
LGUL_SALTY2.400e-3556.45Lactoylglutathione lyase OS=Salmonella typhimurium... [more]
LGUL_SALTI2.400e-3556.45Lactoylglutathione lyase OS=Salmonella typhi GN=gl... [more]
LGUL_SYNY34.093e-3553.66Probable lactoylglutathione lyase OS=Synechocystis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007A03EF RVDevelop1 Citrus clementina cDNA clone C32007A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920333 ID=FC920333; Name=FC920333; organism=Citrus clementina; type=EST; length=738bp
GATAGCTAAGTCTGGAAAATAGATCATCTTCTAGATCATTTCTCACACTT
GCGGCTTCACTCCGACTTTCTGAGTGATTCCATATCAAAATGGCTGAGGC
TTCTCCTGCTGTTGCTAATGCCGAGTTGCTGGAATGGCCAAAGAAAGATA
AGCGACGCCTCCTTCATGCTGTGTATCGTGTTGGTGATCTTGATCGCACC
ATCAAATATTACACTGAATGCTTTGGGATGGAGCTGTTGAGAAAGAGAGA
CGTCCCAGAAGAGAAATACTCAAATGCCTTTCTTGGATTTGGCCCCGAAC
AGTCTTACTTTGTTGTGGAGTTAACATACAACTATGGTGTAACTTCATAT
GATATTGGAACTGGTTTTGGCCATCTTGCAATTGCAACTGAAGATGTTTA
CAAAATGGTTGAAAACATTCGTGCCAAGGGTGGCAATGTGACTAGAGAGC
CTGGTCCACTTAAAGGTATGACAACTCACTTTGCCTTTGTGAAGGATCCC
GATGGTTATATTTTTGAACTCATCCAGAGAGGTCCAACTCCTGAACCACT
CTGTCAAGTAATGCTTCGCGTTGGCGATCTTGGTCGCTCCATCAAGTTCT
ATGAAAAGGCTTTGGGGATGAAACTGTTAAGGACAATTGATAGTCCTGAA
TTGAAGTGCGCCCTGGCCATGCTTGGATATGCTGAGGAAGATCAGACTAC
TGTTCTGGAGTTAGCTTATAGTTATGCTGTGACTGAAT
back to top