FC920341

Overview
NameFC920341
Unique NameFC920341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14123 contig Ccv1_Contig14123:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GDL77_ARATH (GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.809e-76
Identity = 143/201 (71.14%), Postives = 166/201 (82.59%), Query Frame = 3
Query:   69 TSSASVAMRSWMMIIGIAFALGSIVRLAEARAFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIIS 671
            T S  +A  S  ++  ++   G IV   E RAFFVFGDSLVDSGNNNYL TTARAD+PPYGIDFPT RPTGRFSNG NIPD+IS+ IG  E PLPYLSPEL G+ LL GANFASAGIGILNDTG QF+NIIRM++QLDYF +YQ+RVS +IG  Q ++LV++ALVLITVGGNDFVNNY+L PYSARSRQFTLP+YV+ +IS
Sbjct:    2 TISTVIAFMSMFLVFVMS---GPIV--VEGRAFFVFGDSLVDSGNNNYLVTTARADSPPYGIDFPTRRPTGRFSNGLNIPDLISEAIGNEEPPLPYLSPELRGRSLLNGANFASAGIGILNDTGFQFINIIRMYQQLDYFQQYQQRVSRLIGKPQTQRLVSQALVLITVGGNDFVNNYFLFPYSARSRQFTLPDYVRLLIS 197          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: LTL1_ARATH (GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.658e-71
Identity = 130/188 (69.15%), Postives = 157/188 (83.51%), Query Frame = 3
Query:  108 IIGIAFALGSIVRLAEARAFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIIS 671
            +I + F +  +    ++RAFFVFGDSLVD+GNN+YL TTARAD  PYGID+PT RPTGRFSNG NIPDIIS+ IG     LPYLSP L G+ LL+GANFASAGIGILNDTGIQFVNIIR+ +Q++YF +YQ RVSA+IG +  +QLVN+ALVLIT+GGNDFVNNYYL+P+SARSRQ+ LP+YV Y+IS
Sbjct:   11 LISLFFIVTFLAPQVKSRAFFVFGDSLVDNGNNDYLVTTARADNYPYGIDYPTRRPTGRFSNGLNIPDIISEAIGMPST-LPYLSPHLTGENLLVGANFASAGIGILNDTGIQFVNIIRISKQMEYFEQYQLRVSALIGPEATQQLVNQALVLITLGGNDFVNNYYLIPFSARSRQYALPDYVVYLIS 197          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GDL79_ARATH (GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.614e-70
Identity = 128/178 (71.91%), Postives = 155/178 (87.08%), Query Frame = 3
Query:  138 IVRLAEARAFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIIS 671
            +V  A ARAF VFGDSLVD+GNN++LATTARAD  PYGIDFPTHRPTGRFSNG NIPD+IS+ +GQ E+P+PYLSP L   +LL GANFASAGIGILNDTGIQF+NIIR+ +QL+YF +Y+ RVS ++G ++  +LVN ALVLIT+GGNDFVNNYYLVP+SARSRQF+LP+YV ++IS
Sbjct:   22 LVPQANARAFLVFGDSLVDNGNNDFLATTARADNYPYGIDFPTHRPTGRFSNGLNIPDLISEHLGQ-ESPMPYLSPMLKKDKLLRGANFASAGIGILNDTGIQFLNIIRITKQLEYFEQYKVRVSGLVGEEEMNRLVNGALVLITLGGNDFVNNYYLVPFSARSRQFSLPDYVVFVIS 198          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GDL67_ARATH (GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.539e-64
Identity = 122/172 (70.93%), Postives = 145/172 (84.30%), Query Frame = 3
Query:  156 ARAFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIIS 671
            ARAFFVFGDSLVDSGNNNYL TTARAD+PPYGID+PT RPTGRFSNG N+PDIIS++IG SE  LP LSPEL G++LLIGANFASAGIGILNDTG+QF+NI+R+ RQ + F EYQ RVS +IG+ + +QLVN ALVL+T+GGNDFVNNY+  P S R RQ +L  + + +IS
Sbjct:   29 ARAFFVFGDSLVDSGNNNYLVTTARADSPPYGIDYPTGRPTGRFSNGLNLPDIISEQIG-SEPTLPILSPELTGEKLLIGANFASAGIGILNDTGVQFLNILRIGRQFELFQEYQERVSEIIGSDKTQQLVNGALVLMTLGGNDFVNNYFF-PISTRRRQSSLGEFSQLLIS 198          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GDL58_ARATH (GDSL esterase/lipase At3g50400 OS=Arabidopsis thaliana GN=At3g50400 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.267e-37
Identity = 81/163 (49.69%), Postives = 110/163 (67.48%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHR--PTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLV-NRALVLITVGGNDFVNNYYLVPYSARSRQFT 641
            A FVFGDSLVD+GNNNYL T +RA++PP GIDF   R  PTGRF+NG  I DI+ +++GQ    +PYL+P  +G+ LL G N+AS G GILN TG  FVN + M  Q+DYF   +++   ++G  +AR  +  R+L  + +G NDF+NN YLVP+ A   + T
Sbjct:   34 ASFVFGDSLVDAGNNNYLQTLSRANSPPNGIDFKPSRGNPTGRFTNGRTIADIVGEKLGQQSYAVPYLAPNASGEALLNGVNYASGGGGILNATGSVFVNRLGMDIQVDYFTNTRKQFDKLLGQDKARDYIRKRSLFSVVIGSNDFLNN-YLVPFVAAQARLT 195          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: APG2_ARATH (GDSL esterase/lipase APG OS=Arabidopsis thaliana GN=APG PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.501e-34
Identity = 76/181 (41.99%), Postives = 116/181 (64.09%), Query Frame = 3
Query:  135 SIVRLAEAR---AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYII 668
            SI++++ A+   A   FGDS+VD GNNNYL T  RAD PPYG DF  H+ TGRF NG    DI ++ +G ++ P  YLSPE +G+ LLIGANFASA  G  +D      + I +++Q++YF EY+ ++  + G+++A  ++  A+ L++ G +DFV NYY+ P     + +T+  Y  ++I
Sbjct:   18 SILQISFAQLVPAIMTFGDSVVDVGNNNYLPTLFRADYPPYGRDFANHKATGRFCNGKLATDITAETLGFTKYPPAYLSPEASGKNLLIGANFASAASG-YDDKAALLNHAIPLYQQVEYFKEYKSKLIKIAGSKKADSIIKGAICLLSAGSSDFVQNYYVNP--LLYKVYTVDAYGSFLI 195          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GDL64_ARATH (GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana GN=At4g16230 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.230e-33
Identity = 79/171 (46.20%), Postives = 105/171 (61.40%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPN-YVKYIIS 671
            A FVFGDSLVD+GNNNYLAT ++A+  P GIDF +  PTGRF+NG  I DI+ Q +G  E   PYL+P  +G  +L G N+AS G GILN TG  F   I +  QLD FA  ++ + + IG  +A +L   A+  +T G ND +NNY+    S   R+   P  +V  +IS
Sbjct:   30 ANFVFGDSLVDAGNNNYLATLSKANYVPNGIDFGS--PTGRFTNGRTIVDIVYQALGSDELTPPYLAPTTSGSLILNGVNYASGGSGILNSTGKLFGERINVDAQLDNFATTRQDIISWIGESEAAKLFRSAIFSVTTGSNDLINNYFTPVISTLQRKVVAPEVFVDTMIS 198          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GDL38_ARATH (GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33
Identity = 72/163 (44.17%), Postives = 108/163 (66.26%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTH--RPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQ-LVNRALVLITVGGNDFVNNYYLVPYSARSRQFT 641
            A F+FGDSLVD+GNNNYL+T +RA+  P GIDF      PTGRF+NG  I DI+ + +G +   +P+L+P+  G+ LL G N+AS G GI+N TG  FVN + M  Q+D+F   +++   ++G ++A+  +  +++  IT+G NDF+NN YL P  +   +FT
Sbjct:   48 ASFIFGDSLVDAGNNNYLSTLSRANMKPNGIDFKASGGTPTGRFTNGRTIGDIVGEELGSANYAIPFLAPDAKGKALLAGVNYASGGGGIMNATGRIFVNRLGMDVQVDFFNTTRKQFDDLLGKEKAKDYIAKKSIFSITIGANDFLNN-YLFPLLSVGTRFT 209          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GDL86_ARATH (GDSL esterase/lipase At5g45960 OS=Arabidopsis thaliana GN=At5g45960 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 71/170 (41.76%), Postives = 100/170 (58.82%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIIS 671
            A  VFGDS VD GNNNY+ T  + + PPYG+DF    PTGRF NG  + D I+  IG  E   PYL P L    L+ G +FASAG G  +       N+I +  QL+YF EY+R++   +G Q+  + +  A+  ++ G NDFV NY+ +P   R + FT+  Y +++IS
Sbjct:   47 AILVFGDSTVDPGNNNYIDTVFKCNFPPYGLDFRNKTPTGRFCNGRLVTDFIASYIGVKENVPPYLDPNLGINELISGVSFASAGSG-YDPLTPTITNVIDIPTQLEYFREYKRKLEGKMGKQEMEKHIEEAMFCVSAGTNDFVINYFTIP--IRRKTFTIEAYQQFVIS 213          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GDL48_ARATH (GDSL esterase/lipase At2g42990 OS=Arabidopsis thaliana GN=At2g42990 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 73/186 (39.25%), Postives = 110/186 (59.14%), Query Frame = 3
Query:  117 IAFALGSIVRLAEAR--AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYII 668
            +   L ++V +A A+  A  VFGDS VDSGNNN+++T ARA+  PYG DFP  R TGRF NG    D  S+  G       YL P  N      G  FASAG G  N T    + +I ++++++YF EYQ  +SA +G ++A +++  +L ++++G NDF+ NYY +P   R  QF++  Y  +++
Sbjct:   11 LCIILTTLVSIAGAKIPAIIVFGDSSVDSGNNNFISTMARANFEPYGRDFPGGRATGRFCNGRLSSDFTSEAYGLKPTVPAYLDPSYNISDFATGVCFASAGTGYDNSTA-DVLGVIPLWKEVEYFKEYQSNLSAYLGHRRAAKIIRESLYIVSIGTNDFLENYYTLP--DRRSQFSISQYQDFLV 193          
The following BLAST results are available for this feature:
BLAST of FC920341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
GDL77_ARATH1.809e-7671.14GDSL esterase/lipase At5g18430 OS=Arabidopsis thal... [more]
LTL1_ARATH6.658e-7169.15GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana ... [more]
GDL79_ARATH9.614e-7071.91GDSL esterase/lipase At5g33370 OS=Arabidopsis thal... [more]
GDL67_ARATH3.539e-6470.93GDSL esterase/lipase At4g28780 OS=Arabidopsis thal... [more]
GDL58_ARATH1.267e-3749.69GDSL esterase/lipase At3g50400 OS=Arabidopsis thal... [more]
APG2_ARATH8.501e-3441.99GDSL esterase/lipase APG OS=Arabidopsis thaliana G... [more]
GDL64_ARATH3.230e-3346.20GDSL esterase/lipase At4g16230 OS=Arabidopsis thal... [more]
GDL38_ARATH9.399e-3344.17GDSL esterase/lipase At2g23540 OS=Arabidopsis thal... [more]
GDL86_ARATH7.957e-3241.76GDSL esterase/lipase At5g45960 OS=Arabidopsis thal... [more]
GDL48_ARATH7.957e-3239.25GDSL esterase/lipase At2g42990 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007A11EF RVDevelop1 Citrus clementina cDNA clone C32007A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920341 ID=FC920341; Name=FC920341; organism=Citrus clementina; type=EST; length=671bp
AATCCAAGAAGAGTATATATCCATATATCTAATTAGAGTTTCGAAACAAT
ATGTCAATGGCTATTGCGACTTCATCGGCATCAGTAGCAATGCGTTCTTG
GATGATGATTATTGGCATTGCATTTGCTTTAGGATCAATTGTTCGTCTTG
CTGAGGCTCGAGCTTTCTTCGTGTTTGGCGATTCACTCGTCGACAGCGGC
AACAACAACTACCTCGCCACGACTGCCCGTGCAGACGCGCCGCCTTATGG
GATTGATTTTCCTACTCACCGTCCCACAGGCCGTTTCTCCAATGGCTTCA
ACATCCCTGACATTATCAGTCAGAGAATTGGCCAATCGGAAGCCCCATTG
CCATACTTGAGTCCAGAACTCAATGGACAGAGACTGCTCATTGGTGCCAA
CTTCGCTTCAGCGGGAATTGGAATTCTCAATGACACCGGCATCCAATTTG
TAAACATAATTAGAATGTTCAGACAATTGGATTACTTCGCGGAGTACCAG
CGTCGAGTGAGTGCTGTCATTGGAGCCCAGCAAGCTCGCCAACTTGTAAA
CCGAGCACTAGTACTCATCACTGTCGGTGGCAATGATTTTGTGAATAACT
ATTACTTGGTTCCGTACTCTGCAAGATCTCGCCAATTCACTTTGCCCAAT
TATGTCAAGTATATCATCTCT
back to top