FC920361

Overview
NameFC920361
Unique NameFC920361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10240 contig Ccv1_Contig10240:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROF_TOBAC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.946e-54
Identity = 119/204 (58.33%), Postives = 137/204 (67.16%), Query Frame = 1
Query:  112 MALVGST---SITPTKSSFVQPQS---QPF--------ITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKT-----SNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSD 666
            MAL  S+   S+ P KS  VQ QS    P          TKP   + PISA+H++DS+K P      +  P P   T     + V   +WTV+SWKSKKALQLPEYPN+EEL+SVLKT+++FPPIVFAG             +G+AFLLQGGDCAESFKEFNANNIRDTFRILLQM  VLMFGGQMPV  VGRMAGQFAKPRSD
Sbjct:    1 MALSSSSTTNSLLPNKSQLVQNQSLLPSPLKNVSFTTNSTKPVRFVQPISAIHSSDSSKNPIVSDKPSSKPSPPAATVTAAATTVTKTEWTVESWKSKKALQLPEYPNQEELQSVLKTIEEFPPIVFAGEARSLEERLGEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSD 204          
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROF_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 8.177e-53
Identity = 116/188 (61.70%), Postives = 129/188 (68.62%), Query Frame = 1
Query:  139 TPTKSSFVQPQSQPFITKPRSNIHPISAVHAADSAK------------PPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSD 666
            +P K++F    S    TK    + PISAVH++DS K            PP+A  TT  AP  V KT      +W VDSWKSKKALQLPEYPN+EEL SVLKT+D+FPPIVFAG             +G+AFLLQGGDCAESFKEFNANNIRDTFRILLQM  VLMFGGQMPV  VGRMAGQFAKPRSD
Sbjct:   27 SPLKNAFFSNNS----TKTVRFVQPISAVHSSDSNKIPIVSDKPSKSSPPAATATTAPAPA-VTKT------EWAVDSWKSKKALQLPEYPNQEELRSVLKTIDEFPPIVFAGEARSLEERLGEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSD 203          
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROG_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.068e-52
Identity = 118/210 (56.19%), Postives = 136/210 (64.76%), Query Frame = 1
Query:  112 MALVGSTSITPTKSSFVQPQSQPFITKPRSN-------------IHPISAVHAADSAK------------PPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSD 666
            MAL  +T+     S+    Q+QP ++ P  N             + PI+AVH++DS K            PP+A  TT  AP  V KT      +W VDSWKSKKALQLPEYP++EEL SVLKT+D+FPPIVFAG             +G+AFLLQGGDCAESFKEFNANNIRDTFRILLQM  VLMFGGQMPV  VGRMAGQFAKPRSD
Sbjct:    1 MALSTNTTTNSLLSNKSLLQNQPLLSSPSKNAFFSNKSTKTVRFVQPIAAVHSSDSNKNPIVSDKPTKSSPPAATATTAPAPA-VTKT------EWAVDSWKSKKALQLPEYPDQEELRSVLKTIDEFPPIVFAGEARSLEERLGEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSD 203          
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROG_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.462e-50
Identity = 112/195 (57.44%), Postives = 130/195 (66.67%), Query Frame = 1
Query:  112 MALVGSTSITPTKS---------SFVQPQSQPFITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSDP 669
            MAL  + S++ +KS            QP+   F T      HPISAVHAA+ +K  +AVK                  KW++DSWK+KKALQLPEYP+++ELESVLKTL+  PP+VFAG             +GKAFLLQGGDCAESFKEFNANNIRDTFRILLQM VVLMFGGQ+PV  VGRMAGQFAKPRSDP
Sbjct:    1 MALSNTLSLSSSKSLVQSHLLHNPLPQPRFSLFPTTQHGRRHPISAVHAAEPSK--TAVKQG----------------KWSLDSWKTKKALQLPEYPDEKELESVLKTLEMNPPLVFAGEARSLEEKLGEAALGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMSVVLMFGGQVPVIKVGRMAGQFAKPRSDP 177          
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROF_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.443e-49
Identity = 112/195 (57.44%), Postives = 130/195 (66.67%), Query Frame = 1
Query:  112 MALVGSTSITPTKSSFV---------QPQSQPFITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSDP 669
            MAL  + S++ +KS            QP+   F T      HPISAVHAA+ +K  +AVK                  KW++DSWK+KKALQLPEYP+++ELESVLKTL+  PP+VFAG             +GKAFLLQGGDCAESFKEFNANNIRDTFRILLQM VVLMFGGQ+PV  VGRMAGQFAKPRSDP
Sbjct:    1 MALSNTLSLSSSKSLVQSHLLHNPTPQPRFSLFPTTQHGRRHPISAVHAAEPSK--TAVKQG----------------KWSLDSWKTKKALQLPEYPDEKELESVLKTLEMNPPLVFAGEARSLEEKLGEAALGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMSVVLMFGGQVPVIKVGRMAGQFAKPRSDP 177          
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROG_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.885e-49
Identity = 103/156 (66.03%), Postives = 116/156 (74.36%), Query Frame = 1
Query:  214 ISAVHAADSAKPPSAVKTTTKAPEPVL----KTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC-*VGRMAGQFAKPRSD 666
            +SAVHAAD AK    V+   KA  P      +   VG  KWTVDSWK+KKALQLPEYP++EEL+SVLKT++ FPP+VFAG             +G+AF+LQGGDCAESFKEFNANNIRDTFRILLQM  VLMFGGQMPV   VGRMAGQFAKPRSD
Sbjct:   38 VSAVHAADPAKSNGPVQAAAKASSPSTVAAPEKKPVGLGKWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEARHLEERLADAAMGRAFVLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVVGRMAGQFAKPRSD 193          
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROF_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.064e-48
Identity = 99/160 (61.88%), Postives = 119/160 (74.38%), Query Frame = 1
Query:  187 TKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSD 666
            TKP+S ++ ++AVHAA+ A+   +VK +       + +S+ G  KWT +SWK KKALQLP+YPN  ELESVLKT++ FPPIVFAG             +GKAFLLQGGDCAESFKEFNA NIRDTFR+LLQM +VL FGGQ+PV  VGRMAGQFAKPRSD
Sbjct:   38 TKPKS-VNLVTAVHAAEPARNAVSVKES-------VASSSSGALKWTPESWKLKKALQLPDYPNANELESVLKTIEAFPPIVFAGEARNLEERLADAAVGKAFLLQGGDCAESFKEFNATNIRDTFRVLLQMSIVLTFGGQVPVIKVGRMAGQFAKPRSD 189          
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROF_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.351e-47
Identity = 106/205 (51.71%), Postives = 129/205 (62.93%), Query Frame = 1
Query:  115 ALVGSTSITPTKSSFVQPQSQPFITKPRSNIHPISAVHAADSAKPP-----SAVKTTTK------------APEPVLK----TSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSD 666
            ++ G  ++ P  ++     +  F+T  R     + AVHAA+ +K P     SA KT++             AP PV      T  V P +W VDSW++KKALQLPEYPN  ELE+VLKT++ FPPIVFAG             +G+AFLLQGGDCAESFKEFN NNIRDTFR+LLQM  VL FGGQMPV  VGRMAGQFAKPRS+
Sbjct:    8 SMAGGAAVVPRSATATTASA--FVTMKR-RATAVRAVHAAEPSKNPPVGVPSAAKTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAFLLQGGDCAESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSE 209          
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROG_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.805e-45
Identity = 98/188 (52.13%), Postives = 122/188 (64.89%), Query Frame = 1
Query:  112 MALVGSTSITPTKSSFVQPQSQPFITKPRSNIH--PISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSDP 669
            M  + ++S   TKS        P+   PR  I   P+ AVH+ D  K   +   + K               W+++SWKSKKALQLP+YP++++++SVL+TL  FPPIVFAG             +G+AF+LQGGDCAESFKEFNANNIRDTFR+LLQM VVLMFGGQ+PV  VGRMAGQFAKPRSDP
Sbjct:    1 MVTLNASSPLTTKSFL------PYRHAPRRPISFSPVFAVHSTDPKKSTQSASASVK---------------WSLESWKSKKALQLPDYPDQKDVDSVLQTLSSFPPIVFAGEARKLEDKLGQAAMGQAFMLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQLPVIKVGRMAGQFAKPRSDP 167          
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROF_CATRO (Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 79/160 (49.38%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  190 KPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSDP 669
            KPRS+    +AVH     K P +  T TK    +L         W  +SWKSKKALQLPEYP++ +L+ VLKT++ FPP+VFAG             +G AFLLQGGDCAESFKE      R  F+     +  L FGGQ PV  VGRMAGQFAKPR DP
Sbjct:   36 KPRSSRPISAAVHVTQPPKTPISSATATKRRLSLLNGV------W--ESWKSKKALQLPEYPDEGKLDGVLKTIEAFPPLVFAGEARSLEEKLAQAAMGNAFLLQGGDCAESFKELMPLYSR-YFQNTASDECRLTFGGQCPVIKVGRMAGQFAKPRLDP 186          
The following BLAST results are available for this feature:
BLAST of FC920361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AROF_TOBAC1.946e-5458.33Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_SOLTU8.177e-5361.70Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLLC1.068e-5256.19Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_SOLTU8.462e-5057.44Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLLC1.443e-4957.44Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_ORYSJ1.885e-4966.03Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_ARATH6.064e-4861.88Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_ORYSJ1.351e-4751.71Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_ARATH4.805e-4552.13Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_CATRO7.447e-3049.38Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionC32007C11EF RVDevelop1 Citrus clementina cDNA clone C32007C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920361 ID=FC920361; Name=FC920361; organism=Citrus clementina; type=EST; length=670bp
GAGGTTCCTCTTTCACGATAAAGCGTTAAAGAGCCTCCGTTTATTTGAAA
AAAAAAAGGGAAAAAAGAAATTCGTTTCATTTACATTTCAACAAAAATAA
ATTAGAACATTATGGCTCTCGTTGGCAGTACTTCAATTACTCCCACAAAA
TCATCCTTCGTTCAGCCACAATCTCAGCCGTTCATCACCAAACCCAGATC
AAATATCCATCCCATCTCCGCCGTCCATGCTGCTGACTCTGCCAAGCCAC
CGTCTGCCGTAAAAACCACAACAAAGGCACCCGAGCCAGTCCTCAAGACC
AGCAATGTGGGTCCCCAAAAATGGACGGTTGACAGCTGGAAATCCAAGAA
GGCTTTGCAGCTGCCGGAGTATCCAAACAAAGAGGAGCTCGAGTCCGTGC
TGAAAACGCTCGACGATTTCCCGCCGATTGTGTTCGCCGGTGAAGCCAGG
AGCTTGGAGGAGCGGCTAGCTGAAGCCGCCATAGGCAAAGCTTTCTTGCT
TCAAGGCGGTGATTGCGCTGAGAGTTTCAAAGAGTTTAATGCTAATAACA
TTCGTGACACTTTCAGAATCCTTCTCCAGATGGATGTTGTGCTAATGTTC
GGCGGTCAAATGCCCGTTTGTTAGGTGGGAAGAATGGCAGGGCAGTTTGC
GAAGCCGAGATCAGATCCGT
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