FC920362

Overview
NameFC920362
Unique NameFC920362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920362_ssr121 microsatellite FC920362_ssr121:121..132. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig14426 contig Ccv1_Contig14426:35..670. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC920362 vs. ExPASy Swiss-Prot
Match: PFPI_PYRHO (Intracellular protease 1 OS=Pyrococcus horikoshii GN=pfpI PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  288 TYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEHLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG 614
            T +   G++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  IL +A V++GRK T+YP +K  +I AG  W++ E     VVDG
Sbjct:   39 TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEV----VVDG 143          
BLAST of FC920362 vs. ExPASy Swiss-Prot
Match: PFPI_PYRFU (Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 49/121 (40.50%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  279 GHQTYSET---------RGHNFALNATFDEIDPSKYDGLVIPGGRAPEHLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG 614
            GH+ Y  +          G++  ++ TFDE++P ++D LV+PGGRAPE + +N+  +++ RK    GK +A+ICHG  IL +A V+KGRK T+Y  ++  +I AG  WI+ E     VVDG
Sbjct:   27 GHEVYIASFEKGVITGKHGYSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQILISAGVLKGRKGTSYIGIRDDMINAGVEWIDREV----VVDG 143          
BLAST of FC920362 vs. ExPASy Swiss-Prot
Match: PFPI_PYRAB (Intracellular protease 1 OS=Pyrococcus abyssi GN=pfpI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  306 GHNFALNATFDEIDPSKYDGLVIPGGRAPEHLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG 614
            G+   ++  F+E++P ++D LV+PGGRAPE + +N+  +++ +K  + GK +ASICHG  IL +A V++GR+ T+YP +K  +I AG  W++ E     VVDG
Sbjct:   45 GYTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYPGIKDDMINAGVDWVDAEV----VVDG 143          
BLAST of FC920362 vs. ExPASy Swiss-Prot
Match: PFPI_PYRKO (Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.134e-19
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  279 GHQTY--SETRG-----HNFALNA--TFDEIDPSKYDGLVIPGGRAPEHLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG 614
            GH+ Y  S  RG     H + +N    FDE+DP ++D LV+PGGRAPE + +N+  + + +K    GK +ASICHG  IL +A V+KGRK T+   ++  +  AGA WI+ E     VVDG
Sbjct:   27 GHEVYVASFQRGKITGKHGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAVAITKKMFEDGKPVASICHGPQILISAGVLKGRKGTSTVTIRDDVKNAGAEWIDAEV----VVDG 143          
BLAST of FC920362 vs. ExPASy Swiss-Prot
Match: Y1281_ARCFU (Uncharacterized protein AF_1281 OS=Archaeoglobus fulgidus GN=AF_1281 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16
Identity = 41/108 (37.96%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  303 RGHNFALNATFDEIDPSKYDGLVIPGGRAPEHLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGYIIT 626
            +G+    + T++++    Y GLVIPGG++PE + +N+  +++V+ F   GK +A+ICHG  +L +A  VKGR+ T++  ++  LIAAGA + +       VVDG +IT
Sbjct:   44 KGYQVRPDLTYEDVKVEDYAGLVIPGGKSPERVRINERAVEIVKDFLELGKPVAAICHGPQLLISAMAVKGRRMTSWIGIRDDLIAAGALYED----RPVVVDGNVIT 147          
BLAST of FC920362 vs. ExPASy Swiss-Prot
Match: YHBO_ECOLI (Protein yhbO OS=Escherichia coli (strain K12) GN=yhbO PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14
Identity = 34/91 (37.36%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  321 LNATFDEIDPSKYDGLVIPGGRAPEHLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM 593
            ++ + DE+ P+++D L++PGG +P++L  ++  +   R F NSGK + +ICHG  +L +ADV++GRK TA  P+   +  AGA + + E +
Sbjct:   54 IDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVV 144          
BLAST of FC920362 vs. ExPASy Swiss-Prot
Match: GS18_BACSU (General stress protein 18 OS=Bacillus subtilis GN=yfkM PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 34/126 (26.98%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  258 TAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEHLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGYIITGAT 635
            T + +  G     +       ++A+ D+++ S +D L+IPGG +P+ L  +D  +   + F    K + +ICHG  +L  A  + GRK T Y  ++  +  AGA  ++ E +   V    ++T  T
Sbjct:   33 TVIEKEKGKTVKGKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVV---VCQDQLVTSRT 155          
BLAST of FC920362 vs. ExPASy Swiss-Prot
Match: YRAA_BACSU (Putative cysteine protease yraA OS=Bacillus subtilis GN=yraA PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 35/110 (31.82%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  306 GHNFALNATFDEIDPSKYDGLVIPGGRAPEHLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGYIITGAT 635
            G    ++    ++D S +D L+IPGG +P+ L  +D   +  + F  + K + +ICHG  +L   D++KG+  T Y  ++  LI AGA++ + E     VV   I+T  T
Sbjct:   48 GEKVKIDKAISDVDASDFDALLIPGGFSPDLLRADDRPGEFAKAFVENKKPVFAICHGPQVLIDTDLLKGKDITGYRSIRKDLINAGANYKDAEV----VVSHNIVTSRT 153          
The following BLAST results are available for this feature:
BLAST of FC920362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PFPI_PYRHO3.955e-2243.12Intracellular protease 1 OS=Pyrococcus horikoshii ... [more]
PFPI_PYRFU4.373e-2140.50Intracellular protease 1 OS=Pyrococcus furiosus GN... [more]
PFPI_PYRAB1.272e-2041.75Intracellular protease 1 OS=Pyrococcus abyssi GN=p... [more]
PFPI_PYRKO3.134e-1942.98Intracellular protease 1 OS=Pyrococcus kodakaraens... [more]
Y1281_ARCFU7.224e-1637.96Uncharacterized protein AF_1281 OS=Archaeoglobus f... [more]
YHBO_ECOLI2.324e-1437.36Protein yhbO OS=Escherichia coli (strain K12) GN=y... [more]
GS18_BACSU6.997e-1126.98General stress protein 18 OS=Bacillus subtilis GN=... [more]
YRAA_BACSU9.139e-1131.82Putative cysteine protease yraA OS=Bacillus subtil... [more]
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Properties
Property NameValue
Genbank descriptionC32007D01EF RVDevelop1 Citrus clementina cDNA clone C32007D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920362 ID=FC920362; Name=FC920362; organism=Citrus clementina; type=EST; length=636bp
GNGAATCCTCTGGAAATGGCAAACATCAAAGGAGGCAAGAGGAGCGTGCT
GCTACTATGCGGCGATTACATGGAAGACTACGAGGTTCCTTCTTTCTTCT
CCTTCCTGCGTATTCTTTAGTTAATTAATTAATAAAATAAATATTGAATA
TTTTTGTTTATTTGTTTGAGGCGATGGTGCCTTTTCAAGCATTACTGGCT
TTCGGAGTCTCAGTTGATGCCGCGTGTCCCGGAAAGAAATCCGGTGATGT
TTGCCCCACTGCAGTTCATCAATCGACTGGTCATCAGACATATTCCGAGA
CACGTGGTCACAATTTCGCACTCAATGCGACATTTGATGAAATTGACCCG
AGCAAATATGATGGCTTGGTCATACCAGGAGGAAGAGCCCCAGAACATCT
TGCTATGAATGATTCTGTGATTGACTTAGTGAGAAAATTCTCCAACTCGG
GCAAAACAATTGCTTCTATTTGCCATGGGCAGTTAATATTGGCAGCTGCT
GATGTGGTCAAAGGTCGAAAGTGTACAGCATATCCTCCTGTGAAACCTGT
GCTTATTGCCGCTGGTGCTTCTTGGATTGAGCCAGAGACCATGGCAGCTT
GTGTTGTTGATGGNTACATCATTACTGGGGCTACCT
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