FC920366

Overview
NameFC920366
Unique NameFC920366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14126 contig Ccv1_Contig14126:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 1.457e-117
Identity = 198/238 (83.19%), Postives = 216/238 (90.76%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFE 714
            EAIMLAGLAFKRKWQ KRK +GKP+DKPNIVTGANVQVCWEKFARYF           GYYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVKLL++LLTKKN+ETGW+TPIHVDAASGGFIAPFL+PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV+WR+K+DLPDELVFHINYLGSDQPTFTLNFSKGS QIIAQYYQ IRLGFEGYKN+M+NC+ NA+ L EG+ K G F+
Sbjct:  129 EAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWETPIHVDAASGGFIAPFLWPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITKMGRFD 366          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 416.772 bits (1070), Expect = 6.123e-116
Identity = 197/237 (83.12%), Postives = 210/237 (88.61%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAF 711
            EAIMLAGLAFKRKWQ K K QGKP DKPNIVTGANVQVCWEKFARYF           GYYVM+P KAVE+VDENTICVAAILGSTL GEFEDVK L+DLL +KN+ETGWDTPIHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWR KDDLPDEL+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+EGYKN+MENC  NA  LREGLEK G F
Sbjct:  128 EAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKDDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRF 364          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 409.453 bits (1051), Expect = 9.775e-114
Identity = 193/237 (81.43%), Postives = 209/237 (88.19%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAF 711
            EAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYF           GYYVM+P KA E+VDENTICVAAILGSTL GEFEDVK L+DLL KKNEETGW+TPIHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWR  +DLP+EL+FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFEGYKN+MENC+ N   L+EG+EK   F
Sbjct:  127 EAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERF 363          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 406.371 bits (1043), Expect = 8.275e-113
Identity = 191/237 (80.59%), Postives = 209/237 (88.19%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAF 711
            EAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYF           GYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTPIHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG EGY+N+MENC  N   LREGLEK   F
Sbjct:  128 EAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERF 364          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.478e-69
Identity = 126/238 (52.94%), Postives = 164/238 (68.91%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFE 714
            EA ML G+A K +W++ RK+QGKP+DKPNIVTG  VQ+CW KFA YF             Y+M P +A++  DENTI V   LG T T ++EDVK + + L K  +ETG D PIHVDAASGGF+APFL P++ WDFRLP VKSIN SGHK+GL   GVGWVVWR K+D+  +LVF +NYLG + PTF+LNFS+   QI+ QYY F+R G  GY  + + C+ +   + + ++K G F+
Sbjct:  126 EAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISEALDKFEKETGLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFD 362          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.811e-66
Identity = 127/238 (53.36%), Postives = 158/238 (66.39%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFE 714
            EA ML GLA K  W++ RK+ G PYDKPNIVTG  VQ+CW KFA YF           G YVMN  + ++ VDENTI V   LG T T ++EDV  + + L K  +E+G + PIHVDAASGGF+APF+  ++ WDFRLP VKSIN SGHK+GL   GVGWVVWR K DL  +LVF++NYLG +  TF+LNFS+   QIIAQYY F+R G  GY  I + C      + + L+K G F+
Sbjct:  124 EAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDVFSISNALDKFEKESGINIPIHVDAASGGFVAPFIQQEIIWDFRLPRVKSINASGHKFGLSPLGVGWVVWREKKDLHKDLVFNVNYLGGNMSTFSLNFSRPGGQIIAQYYNFLRHGRNGYTLIQDACAQQGIFIGKELKKMGIFD 360          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.189e-64
Identity = 118/239 (49.37%), Postives = 156/239 (65.27%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFEF 717
            EA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + KQG +EF
Sbjct:  128 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEF 365          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.067e-63
Identity = 117/239 (48.95%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFEF 717
            EA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +EF
Sbjct:  128 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.067e-63
Identity = 117/239 (48.95%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFEF 717
            EA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +EF
Sbjct:  128 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.067e-63
Identity = 117/239 (48.95%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFEF 717
            EA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +EF
Sbjct:  128 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365          
The following BLAST results are available for this feature:
BLAST of FC920366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DCE_SOLLC1.457e-11783.19Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_PETHY6.123e-11683.12Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE2_ARATH9.775e-11481.43Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE1_ARATH8.275e-11380.59Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
GADA_DICDI1.478e-6952.94Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
GADB_DICDI5.811e-6653.36Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCEA_SHIFL3.189e-6449.37Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEB_SHIFL2.067e-6348.95Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI2.067e-6348.95Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECO572.067e-6348.95Glutamate decarboxylase beta OS=Escherichia coli O... [more]

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Properties
Property NameValue
Genbank descriptionC32007D05EF RVDevelop1 Citrus clementina cDNA clone C32007D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920366 ID=FC920366; Name=FC920366; organism=Citrus clementina; type=EST; length=734bp
GAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAA
GAGAAAAGAGCAAGGCAAACCCTATGATAAGCCCAATATAGTCACTGGAG
CTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTACTTTGAGGTTGAG
CTGAAGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAATCCTGTGAA
AGCTGTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAGCCATTCTGG
GATCAACCTTGACGGGAGAATTTGAGGATGTTAAGCTTCTTCATGACCTC
CTCACCAAAAAGAATGAGGAGACCGGTTGGGACACCCCCATTCATGTTGA
TGCTGCTAGCGGCGGATTTATTGCTCCTTTTCTCTATCCAGACCTTGAAT
GGGATTTCCGTTTGCCACTGGTGAAGAGCATTAATGTCAGTGGTCACAAG
TACGGCCTTGTATATGCAGGTGTTGGCTGGGTTGTCTGGAGGACCAAAGA
TGACTTGCCGGATGAACTTGTCTTTCACATCAACTACCTTGGATCTGATC
AACCGACTTTCACCCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCT
CAATATTATCAGTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTAT
GGAAAATTGCATGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAC
AGGGCGCTTTTGAATTCTCTCCCAGATGTGGCGT
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