FC920378

Overview
NameFC920378
Unique NameFC920378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:86..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 54/94 (57.45%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFID +YMAYMFKYDS HG FKGT+ V + S + ++G+ +KVF++RDPA IPWG  G DYVVE
Sbjct:    3 KVGINGFGRIGRIVLRNALQFQDIEVVAVNDPFIDLEYMAYMFKYDSVHGRFKGTVEVKNGSFV-VDGRPMKVFAERDPAAIPWGSVGADYVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 56/95 (58.95%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  371 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            TKVGINGFGRIGR+                NDPFID  YM YMFKYDSTHG FKG +    D  L I GK I VF +RDPA IPWG  G DYVVE
Sbjct:    3 TKVGINGFGRIGRIVLRNALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFKGKVE-TKDGKLVIEGKPISVFGERDPAAIPWGKAGADYVVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG FKGT+   ++  L INGK I +F +RDPA I WGD G +YVVE
Sbjct:    3 KVGVNGFGRIGRLVTRAAFTSGKVEVVAINDPFIDLNYMVYMFQYDSTHGKFKGTVK-AENGKLVINGKAITIFQERDPANIKWGDAGAEYVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.245e-23
Identity = 52/94 (55.32%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG FKG I     + L +N K I  + +RDPA IPWG +GVDYVVE
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFKGDIQHSSSNNLTVNNKTIHFYQERDPANIPWGKHGVDYVVE 97          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.830e-23
Identity = 54/94 (57.45%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFID +YM YMFKYDSTHGVFKG++  + D  L I GK I V+ +RDPA I WG  G DYVVE
Sbjct:    4 KVGINGFGRIGRIVLRNAIIHGDIDVVAINDPFIDLEYMVYMFKYDSTHGVFKGSVE-IKDGKLVIEGKPIVVYGERDPANIQWGAAGADYVVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.830e-23
Identity = 52/94 (55.32%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKGTI+ V+ + L +NGK +  + +RDPA IPWG +GV+YVVE
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFKGTID-VNSNGLTVNGKAVTFYQERDPASIPWGKHGVEYVVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.002e-23
Identity = 52/94 (55.32%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG FKGT+   ++  L ING  I +F +RDP+ I WGD G +YVVE
Sbjct:    3 KVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKGTVK-AENGKLVINGNAITIFQERDPSNIKWGDAGAEYVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.533e-23
Identity = 54/94 (57.45%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFID +Y AYMFKYDSTHG FKG +    D  L I+GK I+VF +RDP+ IPWG  G DYVVE
Sbjct:    4 KVGINGFGRIGRIVLRNALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVE-AKDGGLIIDGKHIQVFGERDPSNIPWGKAGADYVVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 6.533e-23
Identity = 52/94 (55.32%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G +YVVE
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVK-AENGKLVINGKSISIFQERDPANIKWGDAGAEYVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.533e-23
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+ KY  YM KYDSTHGVFKGTI  V  S L +NGK +K +++RDP+ IPW D G +Y+VE
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIEPKYAEYMLKYDSTHGVFKGTIQ-VSGSDLIVNGKTVKFYTERDPSAIPWKDTGAEYIVE 96          
The following BLAST results are available for this feature:
BLAST of FC920378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
G3P2_AGABI5.909e-2457.45Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_CRYCU1.316e-2358.95Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CRIGR1.316e-2356.38Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_PARBA2.245e-2355.32Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_PHARH3.830e-2357.45Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_AJECA3.830e-2355.32Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_COTJA5.002e-2355.32Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_YARLI6.533e-2357.45Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_SPECI6.533e-2355.32Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_PODAN6.533e-2355.32Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]

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Properties
Property NameValue
Genbank descriptionC32007E11EF RVDevelop1 Citrus clementina cDNA clone C32007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920378 ID=FC920378; Name=FC920378; organism=Citrus clementina; type=EST; length=657bp
GGAGCCTACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCT
CGTTAGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAA
CAAATGGCCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGT
CCGCGCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGA
CTGCTGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCA
GTTCCAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAG
TATTCAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAA
AATCACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGG
ATTGGAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGT
TGTGGCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGT
TTAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTG
GATGACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAA
AAGGGACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTG
TTGAATC
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