FC920392

Overview
NameFC920392
Unique NameFC920392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920392 vs. ExPASy Swiss-Prot
Match: PREA_SYNY3 (Prenyl transferase OS=Synechocystis sp. (strain PCC 6803) GN=preA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 55/92 (59.78%), Postives = 70/92 (76.09%), Query Frame = 2
Query:  416 ISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELDHKHRRLAEIIEMIHTASLIHDDV 691
            IS  ++F  V +DL+ L  NLK +VGA +P+L +AAE +F AGGKR+RPA+V LVSRAT   +  +EL  +HRRLAEI EMIHTASL+HDDV
Sbjct:    2 ISTTSLFAPVDQDLRLLTDNLKRLVGARHPILGAAAEHLFEAGGKRVRPAIVLLVSRAT---LLDQELTARHRRLAEITEMIHTASLVHDDV 90          
BLAST of FC920392 vs. ExPASy Swiss-Prot
Match: PREA_PORYE (Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 44/88 (50.00%), Postives = 69/88 (78.41%), Query Frame = 2
Query:  428 NIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELDHKHRRLAEIIEMIHTASLIHDDV 691
            ++F  V ++L +L +NLK++ G  +P+L +AA+ +F AGGKR+RPALVFLV++AT+E    ++++   +RLAEI E+IHTASL+HDD+
Sbjct:    6 SLFYPVEQELCSLEKNLKAVAGTRHPILYAAAKHLFDAGGKRVRPALVFLVAKATSE---KQDINTGQKRLAEITEIIHTASLVHDDI 90          
BLAST of FC920392 vs. ExPASy Swiss-Prot
Match: PREA_CYAPA (Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 46/91 (50.55%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  419 SLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELDHKHRRLAEIIEMIHTASLIHDDV 691
            S+ NI   V  +L  L +NLK +VG+ +P+L +A+E +F A GKR RPA+V L+S+AT E    + +  +HRRLAEI E+IHTASL+HDD+
Sbjct:    3 SITNILAPVENELDLLTKNLKKLVGSGHPILSAASEHLFSASGKRPRPAIVLLISKATME---NEIITSRHRRLAEITEIIHTASLVHDDI 90          
BLAST of FC920392 vs. ExPASy Swiss-Prot
Match: PREA_PORPU (Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 44/89 (49.44%), Postives = 67/89 (75.28%), Query Frame = 2
Query:  425 ANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELDHKHRRLAEIIEMIHTASLIHDDV 691
            +++F  + ++L ++  NLKS+ G  +P+L +AA+ +F AGGKRLRPA+V LV+++T+E    +E+    RRLAEI E+IHTASL+HDDV
Sbjct:    5 SSLFHPIEKELYSVEHNLKSVAGTRHPILYAAAKHLFEAGGKRLRPAIVLLVAKSTSE---QQEIKPGQRRLAEITEIIHTASLVHDDV 90          
BLAST of FC920392 vs. ExPASy Swiss-Prot
Match: PREA_CYACA (Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  443 VAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELDHKHRRLAEIIEMIHTASLIHDDV 691
            V EDL  + Q L  ++   NP+L +AA+ +     K++RPA+V LV++A  +    K++    +RLAE+ E+IHTA+L+HDDV
Sbjct:   11 VKEDLLNIEQTLNKLIKVNNPILSAAAKHLLIVESKKIRPAIVLLVAKAIDK---NKKIKTSQQRLAEVTEIIHTATLLHDDV 90          
The following BLAST results are available for this feature:
BLAST of FC920392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PREA_SYNY31.354e-2159.78Prenyl transferase OS=Synechocystis sp. (strain PC... [more]
PREA_PORYE2.391e-1850.00Prenyl transferase OS=Porphyra yezoensis GN=preA P... [more]
PREA_CYAPA2.391e-1850.55Prenyl transferase OS=Cyanophora paradoxa GN=preA ... [more]
PREA_PORPU4.078e-1849.44Prenyl transferase OS=Porphyra purpurea GN=preA PE... [more]
PREA_CYACA3.697e-1140.96Prenyl transferase OS=Cyanidium caldarium GN=preA ... [more]
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Properties
Property NameValue
Genbank descriptionC32007G03EF RVDevelop1 Citrus clementina cDNA clone C32007G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920392 ID=FC920392; Name=FC920392; organism=Citrus clementina; type=EST; length=692bp
GTTCTGTGTTTGTTTCAAAATTTTGTTTTTATGGGGAGATTGAACTGAGT
TCTTTATCTGGATACTTGATTTGAGTCTAAGTTTGGTGCTTTCTTTGTTT
TTTCTTTTTGGGTATTTAGTGCTGAGAATGATGTCAATGACAAGCCACAA
TCTTGATTTTGGAAGAAGTGTACTTGATTTGGTGGCTTGTGGGTGTTCTA
GTAGCGCCTCTATTCATAGGAGTTCAGTGAGAAAAATTGCAATGACAGGT
TCTAGGAAGAGTAACAGGGACTGTGGTGCTAGGAGATTGGTTTGTTGTAG
GCAAAACCTTGCTCGTTGTCGAGTTTATTCCACCAAAACACCTGAGACTC
TACTTAATGAAGTTGGCCAAATTCCTCCAGCGGTTTTGAATTTGAAGGAA
AAGTCAAGAAGCCCAATTTCTCTGGCAAATATTTTTGAAGTGGTTGCTGA
GGACCTTCAGACACTTAATCAGAATCTCAAGTCTATTGTTGGTGCAGAAA
ACCCAGTTTTAATGTCTGCGGCCGAGCAGATCTTTGGTGCTGGTGGTAAG
AGGCTGAGACCAGCTTTGGTGTTCCTAGTGTCAAGGGCTACAGCAGAATT
AGTTGGGTTGAAAGAACTNGACCACAAGCATCGTCGTTTAGCTGAAATCA
TTGAGATGATTCATACTGCAAGTTTGATACATGATGATGTGT
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