FC920427

Overview
NameFC920427
Unique NameFC920427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.210e-59
Identity = 101/174 (58.05%), Postives = 129/174 (74.14%), Query Frame = 3
Query:  141 DDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQ 662
            +DPY  + W VT GT SPLGVPQ+VILINGQFPGP ++  +N+N+I+NV N LD+PFLLTWNGI+ RKN WQDG  GT CPI P +NYTY FQ KDQIGSYFY+P+T MHRAAGGYGG+               + D+T+LIGDW+  +H  L++ LD G+++  PDG++ING+
Sbjct:   24 EDPYFHHVWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNVIINVFNNLDEPFLLTWNGIQHRKNCWQDGTPGTMCPIMPGTNYTYHFQPKDQIGSYFYYPTTGMHRAAGGYGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTQLKKFLDGGRTIGRPDGIVINGK 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.192e-58
Identity = 94/174 (54.02%), Postives = 127/174 (72.99%), Query Frame = 3
Query:  141 DDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQ 662
            +DPY ++ W VT GT++PLGVPQ+ ILINGQFPGPR++  +N+NI++NV N LD+PFL TWNG++ RKNSWQDG  GT CPI P  N+TY+FQ KDQIGSY YFP+T +HRAAGGYG +N                ++ + +GDW+   HK L++ LD G+++  PDG++ING+
Sbjct:   22 EDPYLYFNWNVTYGTIAPLGVPQQGILINGQFPGPRINCTSNNNIVVNVFNNLDEPFLFTWNGVQHRKNSWQDGTPGTMCPIMPGQNFTYRFQVKDQIGSYSYFPTTALHRAAGGYGALNVHSRALIPVPFDNPADEYNVFVGDWYNKGHKTLKKILDGGRTIGRPDGIIINGK 195          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.529e-57
Identity = 103/174 (59.20%), Postives = 125/174 (71.84%), Query Frame = 3
Query:  144 DPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQG 665
            DPY FY + V+  T SPLGVPQ+VI ING+FPGP ++V TN+N+++NV NKLD+  LL WNGI+QR+ SWQDGVLGTNCPIPP  N+TY+FQ KDQIGS+FYFPS    RA+GG+G                 DGD T+ IGDW+  NH  LR+ LD GK L  PDGVLING+G
Sbjct:   22 DPYSFYNFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNENLVVNVRNKLDEGLLLHWNGIQQRRVSWQDGVLGTNCPIPPKWNWTYEFQVKDQIGSFFYFPSLHFQRASGGFGSFVVNPRAIIPVPFSTPDGDITVTIGDWYIRNHTALRKALDDGKDLGMPDGVLINGKG 195          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: SKS2_ARATH (Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.529e-55
Identity = 99/174 (56.90%), Postives = 123/174 (70.69%), Query Frame = 3
Query:  144 DPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQG 665
            DPY  Y +T++  T SPLGVPQ+VI +NG+FPGP ++  TN N+ +NV+N LD+P LLTW G++ R+NSWQDGVLGTNCPIPPN N+TY FQ KDQIGSYFY PS    RA+GG+G +               DG+   +IGDW+  NH  LR+ LDSGK L  PDGVLING+G
Sbjct:   25 DPYVSYDFTLSYITASPLGVPQQVIAVNGKFPGPVINATTNYNVHVNVLNHLDEPLLLTWPGVQMRRNSWQDGVLGTNCPIPPNWNFTYDFQLKDQIGSYFYSPSLNFQRASGGFGALIINNRDLVPIPFTEPDGEIIFIIGDWYTQNHTALRRILDSGKELGMPDGVLINGKG 198          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.529e-55
Identity = 100/174 (57.47%), Postives = 123/174 (70.69%), Query Frame = 3
Query:  144 DPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQG 665
            DP+  Y + V+  T SPLGVPQ+VI +NGQFPGP L+  TN N+++NV N LD+P LLTW GI+ R+NSWQDGVLGTNCPIPP  N+TY+FQ KDQIGS+FY PS    RA+GG+G I               DG+   +IGDW+  +HK LR+ LDSGK L  PDGVLING+G
Sbjct:   26 DPFVSYDFRVSYLTASPLGVPQQVIAVNGQFPGPLLNATTNYNVVVNVFNHLDEPLLLTWPGIQMRRNSWQDGVLGTNCPIPPRWNFTYQFQVKDQIGSFFYSPSLNFQRASGGFGPIVINNRDIIPIPFPQPDGELIFIIGDWYTQDHKALRRALDSGKELGMPDGVLINGKG 199          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC3_THACU (Laccase-3 OS=Thanatephorus cucumeris GN=LCC3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 55/176 (31.25%), Postives = 85/176 (48.30%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFL-----LTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFT-LLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQG 665
            Y   +++G ++P GV ++  L+NG +PGP +     D + + V NKL  P +     + W+G+ Q +N+  DG    T CPI P ++YTY     DQ G+Y+Y          G  G +               D + T L+IGDW+ T+ K +  T     +L  PD   ING+G
Sbjct:   24 YNLKISNGKIAPDGVERDATLVNGGYPGPLIFANKGDTLKVKVQNKLTNPDMYRTTSIHWHGLLQHRNADDDGPAFVTQCPIVPQASYTYTMPLGDQTGTYWYHSHLSSQYVDGLRGPLVIYDPKDPHRRLYDIDDEKTVLIIGDWYHTSSKAILAT--GNITLQQPDSATINGKG 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC2_THACU (Laccase-2 OS=Thanatephorus cucumeris GN=LCC2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 54/176 (30.68%), Postives = 85/176 (48.30%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFL-----LTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQG 665
            Y + V +G ++P GV +  +L+NG+FPGP +     D + + V NKL  P +     + W+G+ Q + + +DG    T CPIPP  +YTY     +Q G+Y+Y          G  G I               D + T+  + DW+ T  + +  T D  K++  PD   ING+G
Sbjct:   24 YGFDVANGAVAPDGVTRNAVLVNGRFPGPLITANKGDTLKITVRNKLSDPTMRRSTTIHWHGLLQHRTAEEDGPAFVTQCPIPPQESYTYTMPLGEQTGTYWYHSHLSSQYVDGLRGPIVIYDPHDPYRNYYDVDDERTVFTLADWYHTPSEAIIATHDVLKTI--PDSGTINGKG 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC3_ARATH (Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.733e-17
Identity = 52/173 (30.06%), Postives = 84/173 (48.55%), Query Frame = 3
Query:  150 YRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLINGQ 662
            +  + + +T   +  L    + I +NGQ+PGP L V   D++ + VIN+      + W+GI+Q +N W DG    T CPI P   YTY+F+ +DQ G+ ++   +   RA   YG +                 D  +L+G+W+  N   +L+Q   +G +    D   INGQ
Sbjct:   27 HHVHQFVITPTPVKRLCRTHQSITVNGQYPGPTLVVRNGDSLAITVINRARYNISIHWHGIRQLRNPWADGPEYITQCPIRPGQTYTYRFKIEDQEGTLWWHAHSRWLRAT-VYGALIIYPRLGSPYPFSMPKRDIPILLGEWWDRNPMDVLKQAQFTGAAANVSDAYTINGQ 198          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: ASO_TOBAC (L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 56/175 (32.00%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSG--KSLPFPDGVLINGQG 665
            R + W V     SP G    V+ INGQFPGP +     D + +++ NKL  +  ++ W+GI+Q    W DG    + C I P   + Y+F+  D+ G+YFY     M R+AG YG +               DG+F LL+ DW+          L S   + +  P  +L+NG+G
Sbjct:   31 RHFKWDVEYIHWSPDGEESVVMGINGQFPGPTIRAKAGDTVAVHLTNKLHTEGVVIHWHGIRQIGTPWADGTAAISQCAINPGETFLYRFKV-DKAGTYFYHGHYGMQRSAGLYGSL-IVEVGEGEKEPFHYDGEFNLLLSDWWHKGSHEQEVDLSSNPLRWIGEPQTLLLNGRG 203          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC24_ORYSJ (Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC24 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 51/172 (29.65%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVIL--INGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLINGQ 662
            YT+ V + ++S L   QE+I+  +NGQ PGP +     D ++++++N+      + W+GI QR   W DG  + T CP+ P  NYTY+F    Q G+ ++       RA      I               D +  +++G+W+KTN + + +++L +G   P  D   ING+
Sbjct:   28 YTFNVGNLSISQL-CQQEMIITAVNGQLPGPTIVATEGDTVVVHMVNESPYNMTIHWHGIFQRGTPWADGPAMVTQCPVRPGGNYTYRFNVTGQEGTLWWHSHFSFLRATVYGALIIKPRGGAKAYPFPVPDEEVVVILGEWWKTNVYDLQQRSLVTGNPAPHADAYTINGK 198          
The following BLAST results are available for this feature:
BLAST of FC920427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ASOL_BRANA2.210e-5958.05L-ascorbate oxidase homolog OS=Brassica napus GN=B... [more]
ASOL_TOBAC3.192e-5854.02L-ascorbate oxidase homolog OS=Nicotiana tabacum P... [more]
SKU5_ARATH3.529e-5759.20Monocopper oxidase-like protein SKU5 OS=Arabidopsi... [more]
SKS2_ARATH2.529e-5556.90Monocopper oxidase-like protein SKS2 OS=Arabidopsi... [more]
SKS1_ARATH2.529e-5557.47Monocopper oxidase-like protein SKS1 OS=Arabidopsi... [more]
LAC3_THACU1.602e-1731.25Laccase-3 OS=Thanatephorus cucumeris GN=LCC3 PE=2 ... [more]
LAC2_THACU1.602e-1730.68Laccase-2 OS=Thanatephorus cucumeris GN=LCC2 PE=2 ... [more]
LAC3_ARATH2.733e-1730.06Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=... [more]
ASO_TOBAC4.662e-1732.00L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE... [more]
LAC24_ORYSJ6.089e-1729.65Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC2... [more]

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Properties
Property NameValue
Genbank descriptionC32008C04EF RVDevelop1 Citrus clementina cDNA clone C32008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920427 ID=FC920427; Name=FC920427; organism=Citrus clementina; type=EST; length=705bp
GGCGGCCAGAAGCTTAGATTAGATTCCATTAGACTCTCAACTCGACTCGA
CTCAACTTTGAAGCAATGGCGAGAACACTCTTGCTGCCGCTACTGGTCTG
TGTAGTTTTGGCTGCCTTGAGTGTTGCTTTGGTGAAGGCAGACGACCCGT
ATAGATTTTACACTTGGACTGTCACTTCTGGCACTTTGTCTCCTCTTGGC
GTTCCCCAAGAGGTTATTCTTATTAATGGTCAGTTTCCCGGTCCTAGATT
GGATGTGGTAACCAATGATAATATCATACTCAATGTCATTAACAAGCTAG
ATCAACCTTTTCTCCTTACTTGGAATGGAATTAAACAAAGGAAGAATTCA
TGGCAAGATGGAGTCCTTGGAACCAATTGCCCCATTCCTCCAAACTCCAA
CTACACTTACAAATTTCAAACCAAGGATCAGATTGGGTCCTACTTTTACT
TCCCATCAACTCTGATGCACCGAGCTGCTGGAGGATATGGAGGAATCAAT
ATCTATCAGAGACCTCGAATACCGATCCCTTACCCAATCCAGGATGGAGA
TTTCACTTTATTAATTGGCGACTGGTTCAAGACAAACCATAAGATATTAC
GACAGACTTTGGACTCAGGGAAGTCTCTTCCATTTCCAGATGGAGTCCTT
ATCAATGGTCAGGGTCATACCACCTTCACGGTGATCAGGAAAAAACTACA
TGTTT
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