FC920442

Overview
NameFC920442
Unique NameFC920442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14144 contig Ccv1_Contig14144:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920442 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 1 
Query:  130 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 570
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of FC920442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC8.608e-2943.62Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionC32008E03EF RVDevelop1 Citrus clementina cDNA clone C32008E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920442 ID=FC920442; Name=FC920442; organism=Citrus clementina; type=EST; length=685bp
CGATCCCAAGTCCGAGCTTTGATCCTTCCAGTTAAAGCCAAAGAGTTCCG
AACGGATCAAAGTTTTCTTGTAGGAGAGAGAAATTTCTAGGGCGAGAAAG
CGAGAGAAAAGGAAATTTGGTAGCTTAAAATGTTGGGAGTGTTCAGCAGC
GCGATCGTTTCACCTCCAGAGGAGCTGGTGGCGGCCGGAAGCCGGACTCC
GTCGCCGAAGACCACATCGACGGCACTGGTCGACCGTTTCCTCCAGACCA
ACTCGTCTGCTGTGTCCGTACAGGTCGGGGACAACGTCACCCTCGCGTAC
ACTCATCAGAACGAGTCTCCTTTACGGCAAAGATCATTTGCTGTGAAAGA
TGAGATCTTTTGCTTGTTTGAGGGAGCACTTGATAACTTGGGAAGCCTGA
GGCAGCAATATGGACTAGCTAAGTCGGCAAATGAAGTGATCTTGGTGATT
GAGGCATACAAGGCTCTGCGTGATCGGGCCCCTTACCCACCGAACCATGT
CGTTGGCCACCTTAGTGGGTACTTTGCCTTCATTGTCTACGACAAGTCCA
CCTCCACCTTGTTTGTGGCTTCTGACCAATTTGGTAAGGTTCCTCTTTAT
TGGGGAATCACTGCTGATGGACATGTTGCCTTTGCTGATGATGCTGACTT
GCTCAAGGTGCTTGCNGCAAGTCACTTGCTTCTTC
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