FC920445

Overview
NameFC920445
Unique NameFC920445
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: CMT3_ARATH (DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana GN=CMT3 PE=1 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 1.859e-79
Identity = 140/202 (69.31%), Postives = 167/202 (82.67%), Query Frame = 1
Query:   85 KILKICYGDPKEIKKRGLYLKIRWRNYGPSEDTWEPIEGLSNCGEKIKEFVTRGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTHDVVLRGVIPTEFERNTVAY 690
            KI+ I +G PK++ KRGLYLK+RW NY  S DTWEPIEGLSNC  KI+EFV  G+KS ILPLPG VDV+CGGPPCQG+SG NRFRN  +PL D+KNKQL+V+M+IV++LKPKFVLMENVVD++K AKG L R+A+ RL+QMNYQVR GMMAAGAYGL QFR+R FLWGA P+E +P + LPTHD+V RG I  EF+ N VAY
Sbjct:  386 KIVGISFGVPKKLLKRGLYLKVRWLNYDDSHDTWEPIEGLSNCRGKIEEFVKLGYKSGILPLPGGVDVVCGGPPCQGISGHNRFRNLLDPLEDQKNKQLLVYMNIVEYLKPKFVLMENVVDMLKMAKGYLARFAVGRLLQMNYQVRNGMMAAGAYGLAQFRLRFFLWGALPSEIIPQFPLPTHDLVHRGNIVKEFQGNIVAY 587          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: CMT1_MAIZE (DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.740e-77
Identity = 133/202 (65.84%), Postives = 160/202 (79.21%), Query Frame = 1
Query:   85 KILKICYGDPKEIKKRGLYLKIRWRNYGPSEDTWEPIEGLSNCGEKIKEFVTRGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTHDVVLRGVIPTEFERNTVAY 690
            K++ ICYG     ++ G+Y K++W  YGP EDTWEPI+ LS+C +KI+EFV  G K KILPLPGDVDVICGGPPCQG+SGFNR+RN+D PL DEKNKQ++ FMDIV +LKPK+VLMENVVDI+KFA G LG+YAL+ L+ M YQ R+GMM AG YGLPQFRMRVFLWGA  +  LP Y LPT+DVV+RG  P  F +  VAY
Sbjct:  445 KLVGICYGGSD--RENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAY 644          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: CMT2_ARATH (DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana GN=CMT2 PE=2 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 4.286e-76
Identity = 130/202 (64.36%), Postives = 159/202 (78.71%), Query Frame = 1
Query:   85 KILKICYGDPKEIKKRGLYLKIRWRNYGPSEDTWEPIEGLSNCGEKIKEFVTRGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTHDVVLRGVIPTEFERNTVAY 690
            K++ IC+GD  +  K GL  K+ W+ Y   EDTWE  E LSNC + I+EFVT GFKSKILPLPG V VICGGPPCQG+SG+NR RN D+PL DE+N+Q+IVFMDIV++LKP +VLMENVVDI++  KG LGRYAL+RL+ M YQ R+G+M AG YGL QFR RVF+WGA P + LPP+ LPTHDV++R  +P EFERN VAY
Sbjct:  790 KLVDICFGDHDKTGKNGLKFKVHWKGYRSDEDTWELAEELSNCQDAIREFVTSGFKSKILPLPGRVGVICGGPPCQGISGYNRHRNVDSPLNDERNQQIIVFMDIVEYLKPSYVLMENVVDILRMDKGSLGRYALSRLVNMRYQARLGIMTAGCYGLSQFRSRVFMWGAVPNKNLPPFPLPTHDVIVRYGLPLEFERNVVAY 991          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: CMT3_MAIZE (DNA (cytosine-5)-methyltransferase 3 OS=Zea mays GN=DMT105 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.549e-76
Identity = 130/189 (68.78%), Postives = 153/189 (80.95%), Query Frame = 1
Query:  124 KKRGLYLKIRWRNYGPSEDTWEPIEGLSNCGEKIKEFVTRGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTHDVVLRGVIPTEFERNTVAY 690
            +K+G+Y K++W  YGP EDTWEPI+ LS+C  KI+EFV  G K KILPLPGDVDVICGGPPCQG+SGFNRFRN+D PL DEKNKQ++ FMDIV +LKPK+VLMENVVDI+KFA G LG+YAL+ L+ M YQ R+GMM AG YGLPQFRMRVFLWGA  +  LP Y LPT+DVV+RG  P  F +  VAY
Sbjct:  460 RKKGVYFKVQWEGYGPEEDTWEPIDNLSDCPLKIREFVQEGRKRKILPLPGDVDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAY 648          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: CMT2_MAIZE (DNA (cytosine-5)-methyltransferase 2 OS=Zea mays GN=ZMET5 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.549e-76
Identity = 130/189 (68.78%), Postives = 153/189 (80.95%), Query Frame = 1
Query:  124 KKRGLYLKIRWRNYGPSEDTWEPIEGLSNCGEKIKEFVTRGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTHDVVLRGVIPTEFERNTVAY 690
            +K+G+Y K++W  YGP EDTWEPI+ LS+C  KI+EFV  G K KILPLPGDVDVICGGPPCQG+SGFNRFRN+D PL DEKNKQ++ FMDIV +LKPK+VLMENVVDI+KFA G LG+YAL+ L+ M YQ R+GMM AG YGLPQFRMRVFLWGA  +  LP Y LPT+DVV+RG  P  F +  VAY
Sbjct:  460 RKKGVYFKVQWEEYGPEEDTWEPIDNLSDCPLKIREFVQEGRKRKILPLPGDVDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAY 648          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: CMT1_ARATH (Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis thaliana GN=CMT1 PE=5 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 8.365e-72
Identity = 120/196 (61.22%), Postives = 153/196 (78.06%), Query Frame = 1
Query:   85 KILKICYGDPKEIKKRGLYLKIRWRNYGPSEDTWEPIEGLSNCGEKIKEFVTRGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTHDVVLRGVIPTEFE 672
            K L I +GDP+   ++ L L +RW+ Y  S DTWEP  GL NC EK+KE+V  GFKS +LPLPG V  +CGGPPCQG+SG+NR+RN + PL D+KN+QL+VF+DI+DFLKP +VLMENVVD+++F+KG L R+A+A  + MNYQ R+GMMAAG+YGLPQ R RVFLW AQP+EKLPPY LPTH+V  +   P EF+
Sbjct:  343 KFLGIMFGDPQGTGEKTLQLMVRWKGYNSSYDTWEPYSGLGNCKEKLKEYVIDGFKSHLLPLPGTVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENVVDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKLPPYPLPTHEVAKKFNTPKEFK 538          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNM1A_ORYSJ (DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica GN=MET1A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.414e-28
Identity = 59/128 (46.09%), Postives = 82/128 (64.06%), Query Frame = 1
Query:  250 KSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633
            K K LP+PG+V+ I GGPPCQG SG NRF    +P +  + + ++ F+   ++ +P+F L+ENV + V F KG   R  LA L++M YQVR G++ AGAYG+ Q R R F+W A P E LP +  P H
Sbjct: 1178 KIKNLPVPGEVEFINGGPPCQGFSGMNRFNQ--SPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVAQSRKRAFIWAAAPGETLPEWPEPMH 1303          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_ARATH (DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  262 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633
            LPLPG VD I GGPPCQG SG NRF       +  + + ++ F+   D+ +P++ L+ENV   V F KG   +  LA L++M YQVR G++ AGAYG+ Q R R F+W A P E LP +  P H
Sbjct: 1183 LPLPGQVDFINGGPPCQGFSGMNRFNQSS--WSKVQCEMILAFLSFADYFRPRYFLLENVRTFVSFNKGQTFQLTLASLLEMGYQVRFGILEAGAYGVSQSRKRAFIWAAAPEEVLPEWPEPMH 1304          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNM1B_ORYSJ (DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.313e-26
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 1
Query:  262 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633
            LP+PG+V+ I GGPPCQG SG NRF    +P +  + + ++ F+   ++ +P+F L+ENV + V F KG   R  +A L++M YQVR G++ AG +G+ Q R R F+W A P E LP +  P H
Sbjct: 1183 LPVPGEVEFINGGPPCQGFSGMNRFNQ--SPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVRFGILEAGTFGVAQSRKRAFIWAAAPGETLPDWPEPMH 1304          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_PARLI (DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus GN=DNMT PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 59/146 (40.41%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  208 NCGEKIKEFVTRGFKS----KILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633
            +C E ++  V +G K+    + LP  GDV+++CGGPPCQG SG NRF +++   +  KN  +  ++   D+ +P+F L+ENV + V + K ++ + AL  LI+M YQ   G++ AG YG+PQ R R  +  A P EKLP Y  P H
Sbjct: 1182 DCNELLR-LVMQGEKTSRTGQKLPQKGDVELLCGGPPCQGFSGMNRFNSRE--YSKFKNSLISSYLSYCDYYRPRFFLLENVRNFVSYKKNMVLKLALRCLIRMGYQCTFGILQAGQYGVPQTRRRAIILAAAPGEKLPFYPEPLH 1324          
The following BLAST results are available for this feature:
BLAST of FC920445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CMT3_ARATH1.859e-7969.31DNA (cytosine-5)-methyltransferase CMT3 OS=Arabido... [more]
CMT1_MAIZE1.740e-7765.84DNA (cytosine-5)-methyltransferase 1 OS=Zea mays G... [more]
CMT2_ARATH4.286e-7664.36DNA (cytosine-5)-methyltransferase CMT2 OS=Arabido... [more]
CMT3_MAIZE9.549e-7668.78DNA (cytosine-5)-methyltransferase 3 OS=Zea mays G... [more]
CMT2_MAIZE9.549e-7668.78DNA (cytosine-5)-methyltransferase 2 OS=Zea mays G... [more]
CMT1_ARATH8.365e-7261.22Putative DNA (cytosine-5)-methyltransferase CMT1 O... [more]
DNM1A_ORYSJ7.414e-2846.09DNA (cytosine-5)-methyltransferase 1A OS=Oryza sat... [more]
DNMT1_ARATH2.385e-2645.97DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsi... [more]
DNM1B_ORYSJ5.313e-2643.55DNA (cytosine-5)-methyltransferase 1B OS=Oryza sat... [more]
DNMT1_PARLI1.002e-2440.41DNA (cytosine-5)-methyltransferase PliMCI OS=Parac... [more]

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Properties
Property NameValue
Genbank descriptionC32008E06EF RVDevelop1 Citrus clementina cDNA clone C32008E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920445 ID=FC920445; Name=FC920445; organism=Citrus clementina; type=EST; length=692bp
GATGATGGCGAATCTGAAGAAGATGATGATAATGGTAATGTAGAAGATGA
GAGTGAAGATGATTCTGAGATTTTTGAGGTAGAGAAAATTCTCAAAATAT
GCTATGGTGATCCAAAGGAGATAAAGAAACGTGGGTTGTATCTGAAGATT
CGTTGGAGAAATTATGGGCCTAGTGAAGACACTTGGGAGCCAATTGAAGG
GTTGAGCAATTGTGGGGAGAAGATAAAAGAATTTGTCACACGCGGATTCA
AATCAAAGATTTTGCCACTGCCTGGAGATGTTGATGTGATTTGTGGGGGA
CCTCCATGCCAAGGAGTTAGTGGATTCAATCGTTTTAGGAACAAAGATAA
TCCACTGGCTGATGAAAAAAATAAACAGCTAATTGTTTTCATGGATATAG
TTGACTTTTTGAAGCCTAAGTTTGTATTGATGGAAAATGTTGTTGACATT
GTCAAGTTTGCCAAAGGATTACTTGGTCGATATGCCTTGGCTCGACTTAT
TCAAATGAATTACCAAGTTCGGATGGGAATGATGGCAGCAGGGGCATATG
GACTTCCCCAATTTCGTATGCGGGTCTTCTTGTGGGGAGCCCAACCTACT
GAGAAATTGCCTCCTTATGCACTTCCAACACATGATGTTGTTTTGAGAGG
GGTTATCCCAACCGAGTTTGAAAGAAACACCGTTGCATATGA
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