FC920446

Overview
NameFC920446
Unique NameFC920446
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11930 contig Ccv1_Contig11930:190..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920446 vs. ExPASy Swiss-Prot
Match: CD123_XENLA (Cell division cycle protein 123 homolog OS=Xenopus laevis GN=cdc123 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19
Identity = 51/131 (38.93%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  327 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTS 719
            M +E+V  CQ  +WYP FK  SIR++I  LPE   +YLLDD    L+ +          R  N  EE++ + S+   +              +K++E+I SLGG+VFPKLNWS+P+DA WI+ + +L+CT+
Sbjct:    1 MKKEQVLNCQFGQWYPTFKKFSIRSVIIPLPENVKDYLLDDGT--LVVSGREESPGCSQRDLNCTEEDEVQWSDD--ESTATLTAPEFPEFSIKVQEAINSLGGSVFPKLNWSSPRDAYWIALNSSLKCTT 127          
BLAST of FC920446 vs. ExPASy Swiss-Prot
Match: CD123_XENTR (Cell division cycle protein 123 homolog OS=Xenopus tropicalis GN=cdc123 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  327 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRC 713
            M +E+V  CQ  +WYP+FK +SIR+++  LPE   +YLLDD G  ++     +       +++  E+E   V     +              +K++E+I SLGG+VFPKLNWS+P+DA WI+ + +L+C
Sbjct:    1 MKKEQVLNCQFSQWYPRFKKLSIRSVVIPLPENVKDYLLDD-GTLVVSGREESPGCSQRDLNSTAEDE---VQWSDDENTATLKAPEFPEFSIKVQEAINSLGGSVFPKLNWSSPRDAYWIALNSSLKC 125          
BLAST of FC920446 vs. ExPASy Swiss-Prot
Match: CD123_NEMVE (Cell division cycle protein 123 homolog OS=Nematostella vectensis GN=cdc123 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.811e-19
Identity = 53/131 (40.46%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  327 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTS 719
            M ++ V  C    WYP+FK+V+IR+ I  L + FV+YL  D    +LP   S+   LP    +  + E+++  E   +               KIKE+I+ LGG VFPKLNWSAP+DA+WIS   TLRC S
Sbjct:    1 MKQQHVENCNFSSWYPRFKNVTIRSKIIPLSKEFVDYLKTDG--VVLPGKPSS---LPRHEDDESDSEEWQNLEEDPEQATVEAPEFNDIDT-KIKEAIQELGGEVFPKLNWSAPRDASWISHDNTLRCKS 125          
BLAST of FC920446 vs. ExPASy Swiss-Prot
Match: CD123_DANRE (Cell division cycle protein 123 homolog OS=Danio rerio GN=cdc123 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 46/131 (35.11%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  327 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTS 719
            M +E+V  CQ   WYP FK  +I++LI  +P+  ++YLLDD    L+ +   N+++     ++  +EED + ++   +              +K++E+I  LGG +FPKLNWSAP+DA WI+ + +L+C S
Sbjct:    1 MKKEQVVNCQFSVWYPLFKKHTIKSLILPIPQNVIDYLLDDGT--LVVSGSENNNSQTQANNSDSDEEDIQWTDD--ETTTTVTAPEFPEFNVKVQEAINVLGGCIFPKLNWSAPRDANWIALNSSLQCQS 127          
BLAST of FC920446 vs. ExPASy Swiss-Prot
Match: CD123_HUMAN (Cell division cycle protein 123 homolog OS=Homo sapiens GN=CDC123 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  327 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRC 713
            M +E V  CQ   WYP F+ V+I+++I  LP+   +YLLDD         VS  D  P       ++E   +     +               K++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C
Sbjct:    1 MKKEHVLHCQFSAWYPFFRGVTIKSVILPLPQNVKDYLLDDG-----TLVVSGRDDPPTHSQPDSDDEAEEIQWSDDENTATLTAPEFPEFATKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKC 124          
BLAST of FC920446 vs. ExPASy Swiss-Prot
Match: CD123_RAT (Cell division cycle protein 123 homolog OS=Rattus norvegicus GN=Cdc123 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  327 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTS 719
            M +E V+ CQ   WYP F+S++I+++I  LP+   +YLLDD     L  S   D    ++  +  E E+ + S+   +               +++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C S
Sbjct:    1 MKKEHVSHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDG---TLVVSGREDPPTCSQPDSGDEAEETQWSDD--ESTATLTAPEFPEFNTQVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKS 126          
BLAST of FC920446 vs. ExPASy Swiss-Prot
Match: CD123_MACFA (Cell division cycle protein 123 homolog OS=Macaca fascicularis GN=CDC123 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  327 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRC 713
            M +E V  CQ   WYP F+ V+I+++I  LP+   +YLLDD         VS  D  P       ++E   +     +               +++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C
Sbjct:    1 MKKEHVLHCQFSAWYPLFRGVTIKSVILPLPQNVKDYLLDDG-----TLVVSGRDDPPTHSQPDSDDEAEEIQWSDDENTATLTAPEFPEFATQVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKC 124          
BLAST of FC920446 vs. ExPASy Swiss-Prot
Match: CD123_BOVIN (Cell division cycle protein 123 homolog OS=Bos taurus GN=CDC123 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  327 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRC 713
            M +E V  CQ   WYP F+S++I+++I  LP+   +YLLDD         VS  +  P       ++E   +     +               K++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C
Sbjct:    1 MKKEHVLHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDG-----TLVVSGREDPPAHSQPDSDDEAEEIQWSDDENTATLTAPEFPEFTTKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKC 124          
BLAST of FC920446 vs. ExPASy Swiss-Prot
Match: CD123_MOUSE (Cell division cycle protein 123 homolog OS=Mus musculus GN=Cdc123 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 47/129 (36.43%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  327 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRC 713
            M +E V+ CQ   WYP F+S++I+++I  LP+   +YLLDD     L  S   D    ++  +  E E+ + S+   +               +++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C
Sbjct:    1 MKKEHVSHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDG---TLVVSGREDPPTCSQSDSGNEAEETQWSDD--ESTATLTAPEFPEFNTQVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKC 124          
BLAST of FC920446 vs. ExPASy Swiss-Prot
Match: CD123_DICDI (Cell division cycle protein 123 homolog OS=Dictyostelium discoideum GN=cdc123 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 50/158 (31.65%), Postives = 70/158 (44.30%), Query Frame = 3
Query:  336 EEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPAS------VSNDDAL-----------------PNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKE-------SIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTS 719
            E   +CQ QEWY KFKSV+  +++  LP+ F++YL  D   F  P        V   D L                 P       +EED    +   +               + KE       SIE LGG +FPKLNWS+PKDA+W++   +L+CT+
Sbjct:   10 ENKKQCQFQEWYEKFKSVTFSSIVIPLPKIFIDYLQSDQ--FTTPHEGFPEFKVDEHDDLFDDNNWSTSKNHISTLDPKYYQGYSDEEDESSDDDDSNDNDKDKKPKRIVNETEFKELSNQIIKSIEKLGGNIFPKLNWSSPKDASWMNVYNSLKCTN 165          
The following BLAST results are available for this feature:
BLAST of FC920446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CD123_XENLA1.775e-1938.93Cell division cycle protein 123 homolog OS=Xenopus... [more]
CD123_XENTR5.166e-1936.43Cell division cycle protein 123 homolog OS=Xenopus... [more]
CD123_NEMVE8.811e-1940.46Cell division cycle protein 123 homolog OS=Nematos... [more]
CD123_DANRE1.272e-1735.11Cell division cycle protein 123 homolog OS=Danio r... [more]
CD123_HUMAN1.662e-1736.43Cell division cycle protein 123 homolog OS=Homo sa... [more]
CD123_RAT3.702e-1736.64Cell division cycle protein 123 homolog OS=Rattus ... [more]
CD123_MACFA3.702e-1735.66Cell division cycle protein 123 homolog OS=Macaca ... [more]
CD123_BOVIN4.835e-1735.66Cell division cycle protein 123 homolog OS=Bos tau... [more]
CD123_MOUSE6.314e-1736.43Cell division cycle protein 123 homolog OS=Mus mus... [more]
CD123_DICDI2.933e-1431.65Cell division cycle protein 123 homolog OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionC32008E07EF RVDevelop1 Citrus clementina cDNA clone C32008E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920446 ID=FC920446; Name=FC920446; organism=Citrus clementina; type=EST; length=722bp
GACCGCCCAACCGTGCATCAAACAGCCGACACCAGCCACACCGACACACC
TTCAGTCGTCGCTGCCTCACTCACAGCCATCATCACTGTCGACCGTCGCA
AGCCCAGCACTGCAGCTGCCGGCAGGCAACCACGCGAGTCGCGACGAACC
TGCACCAGCAGCGGCTGCAGCGCGACGCACGGACGCCAGCAGCAATGAAC
CCACTCTAAGCCTTGTATCCAGCATAGTAGCATACCCACGTGATCTATTG
ATCTTTGAGATAATAGAAGGAGTTTCAGTGCTTTAATACATTGACCGTGC
TGAGCCATTATTCTACAATGTTAGGAATGACAGAGGAAGAAGTTAACCGT
TGCCAGATTCAAGAATGGTACCCAAAATTTAAATCTGTGTCCATAAGAAC
CCTGATTCATGAGCTTCCAGAATATTTTGTGGAGTACCTTCTTGATGATT
CTGGGCCCTTTCTCCTTCCCGCTTCCGTTTCAAATGACGATGCGCTGCCA
AATAGAATCCACAATGCTTTTGAAGAAGAGGACTATCGGGTCTCTGAAGG
ATCTGGAGATGAAGCAGAACCTTCATCTCCTCCATCTTTTCCAGAACTAG
AATTAAAGATCAAGGAATCTATTGAATCCCTTGGGGGTGCAGTTTTCCCT
AAGCTGAATTGGAGTGCACCAAAAGATGCCGCTTGGATCAGCACTTCTGG
GACCCTTCGATGCACTTCATTC
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