FC920448

Overview
NameFC920448
Unique NameFC920448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14146 contig Ccv1_Contig14146:40..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920448 vs. ExPASy Swiss-Prot
Match: NUDT2_ARATH (Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.149e-34
Identity = 75/152 (49.34%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  169 MSSDPISTNLISVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKREVLVVQENNGALKGTGV 624
            MS+   STN +S E+   ++P           +V D +GGV  +M  PMD  +F             QGK+GVWIKLP +L  L + AV+EGF +HHAE DYLMLVYWIP+  D LPANASHRVG+GAFV+N+ +EVLVVQE  G  +G G+
Sbjct:    1 MSASSSSTNPMSREDATTLLP-----------SVQDKYGGVMTEMTHPMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETAVKEGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQGQGI 141          
BLAST of FC920448 vs. ExPASy Swiss-Prot
Match: NUDT7_ARATH (Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.237e-33
Identity = 72/124 (58.06%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  256 LLTAVGDLHGGVTVDMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMN-NKREVLVVQENNGALKGTGV 624
            LL    D + GVTV M +PMDS+VF            ++GK+G+WIKLP+ LANLV+ AV EGFRYHHAEP+YLMLV WI ET D +PANASH VG GA V+N N +EVLVVQE +G  K   V
Sbjct:   10 LLEGETDNYDGVTVTMVEPMDSEVFTESLRASLSHWREEGKKGIWIKLPLGLANLVEAAVSEGFRYHHAEPEYLMLVSWISETPDTIPANASHVVGAGALVINKNTKEVLVVQERSGFFKDKNV 133          
BLAST of FC920448 vs. ExPASy Swiss-Prot
Match: NUD10_ARATH (Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.520e-31
Identity = 67/124 (54.03%), Postives = 83/124 (66.94%), Query Frame = 1
Query:  253 ELLTAVGDLHGGVTVDMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKREVLVVQENNGALKGTGV 624
            E+L  V D +GGV V+MK PMD+K F             QGK+GVW+ LP+   NLV+PAV+EGFRYHHAEP YLMLVYWIPE    +P NASHRV VGA V+N+ +E     E  G+L G+G+
Sbjct:   18 EVLPFVDDDYGGVIVEMKTPMDTKNFVAALRDSFEQWRLQGKKGVWLNLPLSHVNLVEPAVKEGFRYHHAEPTYLMLVYWIPEAESTIPLNASHRVRVGAVVLNHNKE-----EKYGSLCGSGI 136          
BLAST of FC920448 vs. ExPASy Swiss-Prot
Match: NUDT6_ARATH (Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.505e-26
Identity = 63/124 (50.81%), Postives = 78/124 (62.90%), Query Frame = 1
Query:  256 LLTAVGDLHGGVTVDMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNK-REVLVVQENNGALKGTGV 624
            LL  V D +GGV V++ +PM  + F             QG +G+W+KL   L NL+ PA  EGF  HHAE +Y ML  WI +    LPANASHR+GVGAFV+N K +EVLVVQE +G  KGTGV
Sbjct:   10 LLQGVPDNYGGVKVNLTEPMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPAKAEGFVCHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFKGTGV 133          
BLAST of FC920448 vs. ExPASy Swiss-Prot
Match: NUDT8_ARATH (Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 66/142 (46.48%), Postives = 85/142 (59.86%), Query Frame = 1
Query:  205 VEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKK-PMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIP-ETADVLPANASHRVGVGAFVMNNKREVLVVQENNGALKGTGV 624
            V  +   +    V+   LL A  D +GGV VD  K P +   F            ++GK+GVW+KLP+E + LV  A++EGF YHHAE  Y+ML YWIP E   +LPANASH+VGVG FV+N  +EVLVVQE   A   TG+
Sbjct:   78 VNLKSRTLMSSAVKERSLLDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKLPVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGL 219          
BLAST of FC920448 vs. ExPASy Swiss-Prot
Match: NUDT5_ARATH (Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 63/161 (39.13%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  166 NMSSDPISTNLISVEEEQ------NMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKV--FXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKREVLVVQENNGALKGTGV 624
            +M  +    +L+  EE++      N+M  +      LL    D  GG  V++ +     +  F             QGK+G+WIKLP EL++LV  A+++GF YHHAE +Y+ML +W+PE    LP NASHR+G+GAFV+N   E+LVVQEN+G  K   V
Sbjct:   19 SMDGEAFEISLLDGEEDRFGGTVVNLMDGEAFEI-SLLDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSSLVDTAIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQENSGYFKDKNV 178          
BLAST of FC920448 vs. ExPASy Swiss-Prot
Match: NUDT6_HUMAN (Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens GN=NUDT6 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 40/115 (34.78%), Postives = 57/115 (49.57%), Query Frame = 1
Query:  274 DLHGGVTV-----DMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGV-GAFVMNNKREVLVVQENN 600
            D  GG++V     D    +D+  F             +G+  VW+ +PI  +  + PA   GF +HHAE D   L  W+ E    LP  ASH+VGV GA    + R++LVVQ+ N
Sbjct:   51 DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAESDSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDRN 165          
BLAST of FC920448 vs. ExPASy Swiss-Prot
Match: NUDT6_RAT (Nucleoside diphosphate-linked moiety X motif 6 OS=Rattus norvegicus GN=Nudt6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 1
Query:  274 DLHGGVTVDMKKP-----MDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMN-NKREVLVVQENN 600
            D  GG++V + +      +D+  F             +G+   W+ +PI  ++ + PA   GF +HHAEP    L  W+ E    LP  A+H+VGV   V + + R+VLVVQ+ N
Sbjct:   48 DRFGGISVHLSRHRTLHRLDAAAFRRLLQAAIQQWRAEGRIAAWLHIPILQSHFIAPAASLGFCFHHAEPHLSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDRN 162          
The following BLAST results are available for this feature:
BLAST of FC920448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NUDT2_ARATH1.149e-3449.34Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2... [more]
NUDT7_ARATH8.237e-3358.06Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7... [more]
NUD10_ARATH4.520e-3154.03Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT... [more]
NUDT6_ARATH1.505e-2650.81Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6... [more]
NUDT8_ARATH1.965e-2646.48Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8... [more]
NUDT5_ARATH1.965e-2639.13Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5... [more]
NUDT6_HUMAN1.047e-1134.78Nucleoside diphosphate-linked moiety X motif 6 OS=... [more]
NUDT6_RAT6.785e-1132.17Nucleoside diphosphate-linked moiety X motif 6 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC32008E09EF RVDevelop1 Citrus clementina cDNA clone C32008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920448 ID=FC920448; Name=FC920448; organism=Citrus clementina; type=EST; length=626bp
CTCTCTTGTACAAAGGAGGCATCATGAGAAAGCATTGATTCACTTTTGCC
AGCTGAAGGCTAGCTCCTTGGCGTCTTATATATTTTTTGCAGCCCCATTT
GATTCCATTATCGACCAATAGGTCGCAGGCTAGAGTACAGAGGGTTCCAA
TATTAATAGATTGGAAACATGTCCAGCGATCCAATTTCAACGAATTTAAT
ATCAGTTGAGGAGGAGCAGAACATGATGCCTGAAGATGGCGTTCGGTGTC
CAGAATTACTCACTGCTGTTGGTGATTTGCATGGTGGGGTTACAGTAGAT
ATGAAAAAGCCAATGGATTCTAAGGTCTTTTCTTCTAGGCTTAGAGCTTC
ATTATCGTTATGGAGGCAGCAGGGGAAGAGGGGTGTTTGGATTAAACTGC
CTATTGAACTTGCTAATCTTGTTAAACCTGCAGTTCAGGAAGGATTTCGG
TACCACCATGCTGAACCAGATTACTTGATGCTTGTCTATTGGATCCCGGA
AACTGCTGATGTTCTTCCTGCTAATGCTTCTCATCGCGTTGGTGTTGGTG
CTTTTGTCATGAACAATAAAAGAGAGGTTCTGGTTGTGCAGGAGAACAAT
GGAGCACTCAAAGGTACCGGCGTCTG
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