FC920450

Overview
NameFC920450
Unique NameFC920450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10223 contig Ccv1_Contig10223:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920450 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 358.607 bits (919), Expect = 1.994e-98
Identity = 169/212 (79.72%), Postives = 188/212 (88.68%), Query Frame = 2
Query:  101 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLXRCHKERSGFEGPWTPHPLIFDNSYFTELLTGEKDGLLQLPSRQALL 736
            M K+YPTVS DY+KA+EK KRKLRGFIAEK CAPL+LR+AWHSAGT+D KTKTGGPFGT++  AE AH ANNGLDIAVRLLEP KEQFP +SYAD YQLAGVV VE+TGGP++PFHPGR+DK EPP EGRLPDA +G+DHLR VFG  MGLSD+DIVALSGGHT+   HKERSGFEGPWT +PLIFDNSYFTELLTGEKDGLLQLPS +ALL
Sbjct:    1 MGKSYPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALL 212          
BLAST of FC920450 vs. ExPASy Swiss-Prot
Match: APX1_ARATH (L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 3.761e-97
Identity = 166/212 (78.30%), Postives = 189/212 (89.15%), Query Frame = 2
Query:  101 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLXRCHKERSGFEGPWTPHPLIFDNSYFTELLTGEKDGLLQLPSRQALL 736
            MTKNYPTVSEDYKKAVEKC+RKLRG IAEKNCAP+M+R+AWHSAGT+D +++TGGPFGTMR  AEQAH AN+G+ IA+RLL+P +EQFPTIS+AD +QLAGVV VEVTGGPDIPFHPGR+DK +PP EGRLPDA +G DHLR VF  QMGLSDKDIVALSG HTL RCHK+RSGFEG WT +PLIFDNSYF ELL+GEK+GLLQL S +ALL
Sbjct:    1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALL 212          
BLAST of FC920450 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 9.263e-96
Identity = 164/211 (77.73%), Postives = 187/211 (88.63%), Query Frame = 2
Query:  104 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLXRCHKERSGFEGPWTPHPLIFDNSYFTELLTGEKDGLLQLPSRQALL 736
            +K+YPTVS++Y  AV K KRKLRG IAEKNCAPLMLR+AWHSAGT+DV ++TGGPFGTM+   EQ+H+AN GLDIAVRLL+P K+Q P +SYAD YQLAGVV VEVTGGP++PFHPGR DK EPP EGRLPDA QG+DHLRQVF AQMGLSDKDIVALSGGHTL RCHKERSGFEG WT +PLIFDNSYFTEL++GEK+GLLQLPS +AL+
Sbjct:    3 SKSYPTVSDEYLAAVGKAKRKLRGLIAEKNCAPLMLRLAWHSAGTFDVSSRTGGPFGTMKNPGEQSHAANAGLDIAVRLLDPIKDQLPILSYADFYQLAGVVAVEVTGGPEVPFHPGRQDKPEPPPEGRLPDATQGSDHLRQVFSAQMGLSDKDIVALSGGHTLGRCHKERSGFEGAWTSNPLIFDNSYFTELVSGEKEGLLQLPSDKALM 213          
BLAST of FC920450 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.597e-95
Identity = 163/212 (76.89%), Postives = 188/212 (88.68%), Query Frame = 2
Query:  101 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLXRCHKERSGFEGPWTPHPLIFDNSYFTELLTGEKDGLLQLPSRQALL 736
            M KNYP VS +Y++AVEK ++KLR  IAEK+CAPLMLR+AWHSAGT+DV +KTGGPFGTM+  AE +H+AN GLDIAVR+LEP KE+ PTISYAD YQLAGVV VEV+GGP +PFHPGR+DK  PP EGRLPDA +G+DHLRQVFGAQMGLSD+DIVALSGGHTL RCHKERSGFEGPWT +PL FDNSYFTELL+G+K+GLLQLPS +ALL
Sbjct:    1 MAKNYPVVSAEYQEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKGSDHLRQVFGAQMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALL 212          
BLAST of FC920450 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.597e-95
Identity = 163/212 (76.89%), Postives = 188/212 (88.68%), Query Frame = 2
Query:  101 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLXRCHKERSGFEGPWTPHPLIFDNSYFTELLTGEKDGLLQLPSRQALL 736
            M KNYP VS +Y++AVEK ++KLR  IAEK+CAPLMLR+AWHSAGT+DV +KTGGPFGTM+  AE +H+AN GLDIAVR+LEP KE+ PTISYAD YQLAGVV VEV+GGP +PFHPGR+DK  PP EGRLPDA +G+DHLRQVFGAQMGLSD+DIVALSGGHTL RCHKERSGFEGPWT +PL FDNSYFTELL+G+K+GLLQLPS +ALL
Sbjct:    1 MAKNYPVVSAEYQEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKGSDHLRQVFGAQMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALL 212          
BLAST of FC920450 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 342.813 bits (878), Expect = 1.132e-93
Identity = 162/210 (77.14%), Postives = 185/210 (88.10%), Query Frame = 2
Query:  107 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLXRCHKERSGFEGPWTPHPLIFDNSYFTELLTGEKDGLLQLPSRQALL 736
            K+YP V E+YKKAV++CKRKLRG IAEK+CAP++LR+AWHSAGT+DVKTKTGGPFGT+R   E AH ANNGLDIAVRLL+P KE FP +SYAD YQLAGVV VE+TGGP+IPFHPGR DK EPP EGRLP A +G DHLR VFG +MGL+DKDIVALSGGHTL RCHKERSGFEG WTP+PLIFDNSYF E+L+GEK+GLLQLP+ +ALL
Sbjct:    4 KSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFG-RMGLNDKDIVALSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALL 212          
BLAST of FC920450 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.206e-72
Identity = 135/207 (65.22%), Postives = 156/207 (75.36%), Query Frame = 2
Query:  116 PTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLXRCHKERSGFEGPWTPHPLIFDNSYFTELLTGEKDGLLQLPSRQALL 736
            P V  +Y K + K +R+LR  IA KNCAP+MLR+AWH AGTYD ++KTGGP G++R   E  H AN+GL IA+ L E  K + P I+YADLYQLAGVV VEVTGGPDI F PGR D    P+EGRLPDAKQG  HLR VF  +MGLSDKDIVALSGGHTL R H ERSGF+GPWT  PL FDNSYF ELL GE +GLL+LP+ + LL
Sbjct:    4 PIVDAEYLKEITKARRELRSLIANKNCAPIMLRLAWHDAGTYDAQSKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGVKAKHPKITYADLYQLAGVVAVEVTGGPDIVFVPGRKDSNVCPKEGRLPDAKQGFQHLRDVF-YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTQEPLKFDNSYFVELLKGESEGLLKLPTDKTLL 209          
BLAST of FC920450 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.000e-70
Identity = 131/207 (63.29%), Postives = 155/207 (74.88%), Query Frame = 2
Query:  116 PTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLXRCHKERSGFEGPWTPHPLIFDNSYFTELLTGEKDGLLQLPSRQALL 736
            P V  +Y + V++ +R LR  I+ K CAP+MLR+AWH AGTYDV TKTGG  G++R   E  H +N GL IA+ LLEP K + P I+YADLYQLAGVV VEVTGGP + F PGR D +  P+EGRLPDAK+G  HLR +F  +MGLSDKDIVALSGGHTL R H ERSGFEG WT  PL FDNSYF ELL GE +GLL+LP+ +ALL
Sbjct:    4 PVVDAEYLRQVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNTKTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSSVCPREGRLPDAKKGALHLRDIF-YRMGLSDKDIVALSGGHTLGRAHPERSGFEGAWTQEPLKFDNSYFLELLKGESEGLLKLPTDKALL 209          
BLAST of FC920450 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.945e-69
Identity = 128/207 (61.84%), Postives = 157/207 (75.85%), Query Frame = 2
Query:  116 PTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLXRCHKERSGFEGPWTPHPLIFDNSYFTELLTGEKDGLLQLPSRQALL 736
            P V  +Y   VE+ +R LR  IA K+CAP+MLR+AWH AGTYD  TKTGGP G++R   E +H+AN G+ IA+ LLEP K++ P I+YADLYQLAGVV VEVTGGP I + PGR D ++ P+EGRLPDAK+G  HLR+VF  +MGLSDKDIVALSGGHTL +   ERSGF+G WT  PL FDNSYF ELL    +GLL+LP+ +AL+
Sbjct:    5 PVVDAEYMAEVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPDAKKGAAHLREVF-YRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALV 210          
BLAST of FC920450 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.945e-69
Identity = 128/207 (61.84%), Postives = 157/207 (75.85%), Query Frame = 2
Query:  116 PTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLXRCHKERSGFEGPWTPHPLIFDNSYFTELLTGEKDGLLQLPSRQALL 736
            P V  +Y   VE+ +R LR  IA K+CAP+MLR+AWH AGTYD  TKTGGP G++R   E +H+AN G+ IA+ LLEP K++ P I+YADLYQLAGVV VEVTGGP I + PGR D ++ P+EGRLPDAK+G  HLR+VF  +MGLSDKDIVALSGGHTL +   ERSGF+G WT  PL FDNSYF ELL    +GLL+LP+ +AL+
Sbjct:    5 PVVDAEYMAEVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPDAKKGAAHLREVF-YRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALV 210          
The following BLAST results are available for this feature:
BLAST of FC920450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
APX1_PEA1.994e-9879.72L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]
APX1_ARATH3.761e-9778.30L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis... [more]
APX2_ORYSJ9.263e-9677.73L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX1_ORYSJ4.597e-9576.89L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ORYSI4.597e-9576.89L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX2_ARATH1.132e-9377.14L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX3_ARATH3.206e-7265.22L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]
APX4_ORYSJ3.000e-7063.29Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ORYSJ1.945e-6961.84Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI1.945e-6961.84Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC32008E11EF RVDevelop1 Citrus clementina cDNA clone C32008E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920450 ID=FC920450; Name=FC920450; organism=Citrus clementina; type=EST; length=737bp
GGTGCTCTGCTCGTGCCACTCTCCTTTGTTAAGGATTTGCGTCTCTCTTT
CTTATTTCATTCAGCGGTCAGTGACGTTAACAGATCTGTTCCTTGAAAAG
ATGACGAAGAATTACCCCACTGTTAGCGAGGATTACAAGAAGGCCGTGGA
GAAATGCAAGAGGAAGCTCAGAGGCTTCATCGCTGAGAAGAACTGCGCTC
CACTCATGCTCCGTATCGCGTGGCACTCAGCTGGTACATATGATGTGAAG
ACCAAGACCGGAGGTCCATTCGGAACCATGAGGCTCGCTGCTGAGCAGGC
ACACTCAGCCAACAACGGCCTCGATATTGCCGTTAGGCTTTTGGAGCCGT
TCAAGGAGCAGTTCCCTACCATCTCCTACGCTGACCTTTATCAGCTTGCT
GGTGTTGTTGGCGTTGAGGTTACCGGTGGGCCCGATATCCCCTTCCACCC
TGGAAGAGATGACAAGGCTGAGCCACCTCAAGAAGGCCGGCTTCCTGATG
CTAAACAGGGTAATGATCACTTGAGGCAAGTCTTTGGTGCTCAGATGGGC
CTCAGCGACAAGGATATTGTTGCTCTCTCTGGTGGCCACACCCTGNGAAG
GTGCCACAAGGAGAGGTCTGGATTTGAGGGACCATGGACCCCGCACCCTC
TCATTTTTGACAATTCCTACTTCACGGAGCTCTTGACTGGTGAGAAGGAT
GGTCTTCTGCAATTGCCATCCCGACAGGCCCTTCTGG
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