FC920455

Overview
NameFC920455
Unique NameFC920455
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5949 contig Ccv1_Contig5949:95..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920455 vs. ExPASy Swiss-Prot
Match: PIP_AERSO (Proline iminopeptidase OS=Aeromonas sobria GN=pip PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 4.209e-41
Identity = 89/182 (48.90%), Postives = 117/182 (64.29%), Query Frame = 1 
Query:  106 VSSPEHVAGKWYSVPDLRLRDHRFTVPLDYALDRDVSPKISLFAREVVAVGKEEQSLPYLLFLQGGPGFECRGPTESSGWINKACEEFRVVLMDQRGTGLSTPLSVSSMLQMKSAKDLVDYLKHFRADSIVNDAEFIRVRLDPDAKPWTVLGQSYGGFCAVTYLSFAPQGLKQVLLTGGTPP 651
            +SSP H     Y +  +    H FTVPLD+    D    I+LF R +    + +  LP+LL+LQGGPGF    P+ + GWI +A +EFRV+L+DQRGTG STP+  + +L   + +   DYL HFRADSIV DAE IR +L PD  PW++LGQS+GGFC++TYLS  P  L +V LTGG  P
Sbjct:    1 MSSPLH-----YVLDGIHCEPHFFTVPLDHQQPDD-EETITLFGRTLCRKDRLDDELPWLLYLQGGPGFGAPRPSANGGWIKRALQEFRVLLLDQRGTGHSTPIH-AELLAHLNPRQQADYLSHFRADSIVRDAELIREQLSPD-HPWSLLGQSFGGFCSLTYLSLFPDSLHEVYLTGGVAP 174
The following BLAST results are available for this feature:
BLAST of FC920455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PIP_AERSO4.209e-4148.90Proline iminopeptidase OS=Aeromonas sobria GN=pip ... [more]
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Properties
Property NameValue
Genbank descriptionC32008F04EF RVDevelop1 Citrus clementina cDNA clone C32008F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920455 ID=FC920455; Name=FC920455; organism=Citrus clementina; type=EST; length=670bp
GGCACCATTTCAATATTTCCAGCCACAAAACTTCACTCCTTCCACTCACG
CCGGAGTAGGGTCTGCGCATTCATCGCCATGACCGGAAACAATGCCGCGG
CTGGCGTATCATCGCCGGAACACGTTGCGGGGAAGTGGTACTCCGTACCG
GATCTCCGGCTTCGCGATCATCGCTTCACTGTCCCTCTCGATTACGCCCT
CGATCGCGATGTCTCTCCTAAGATCTCCCTTTTTGCTCGCGAAGTTGTTG
CTGTTGGAAAAGAGGAGCAATCATTGCCGTATCTGTTATTTTTACAAGGT
GGGCCTGGTTTTGAATGCCGGGGGCCAACTGAATCCAGTGGATGGATAAA
TAAAGCATGTGAAGAATTTCGTGTTGTATTGATGGATCAGAGAGGAACAG
GCTTATCTACTCCTCTGTCAGTATCATCTATGCTGCAAATGAAGTCTGCT
AAGGATTTAGTTGACTACTTAAAACATTTTAGAGCTGATAGTATTGTAAA
TGACGCTGAATTCATCCGTGTTCGTCTTGATCCTGATGCTAAACCTTGGA
CGGTCTTGGGCCAGAGCTATGGTGGTTTTTGTGCGGTCACCTATTTGAGT
TTTGCACCACAAGGGCTCAAACAAGTCCTTCTAACTGGAGGAACTCCTCC
CTTTAGGAATGGTTGCTCTG
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