FC920462

Overview
NameFC920462
Unique NameFC920462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig107 contig Ccv1_Contig107:23..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPR2_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis thaliana GN=CLPR2 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.970e-71
Identity = 134/196 (68.37%), Postives = 155/196 (79.08%), Query Frame = 3
Query:    3 SVSLNANLYQPSLS--CNLKLYSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            +VS N  L+QPSLS  C++KLYSGLK QS S   +G  NL+ EFYGRV+KSL SG    K  R R+ MMPIGTP+V YR   EG+WQWVD+WNALYRERVIFIGQNIDEEFSNQILATMLYLD++DDS+R+YMY+NGPGGD+TP+LAIYDTM+SLKSPVGTHCVG AY+            +R AMPLSRIAL SP
Sbjct:    2 AVSFNTTLHQPSLSPSCSIKLYSGLKPQSASFLASGYQNLNKEFYGRVYKSLQSG--TGKASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSP 195          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_THEEB (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.220e-32
Identity = 68/128 (53.12%), Postives = 84/128 (65.62%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR PGE   QW+D++N LYRER+IF+G+ +D+E +NQI+A MLYLDS D  K + +YIN PGG VT  +AIYDTMQ +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGVPKVPYRLPGEPYTQWIDIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP3_ANASP (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 66/128 (51.56%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR PG     W+ +++ LYRER+IF+G+++D+E +NQI+A MLYLDS D  K +Y+YIN PGG VT  LAIYDTMQ +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGVPKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_ANAVT (ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 66/128 (51.56%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR PG     W+ +++ LYRER+IF+G+++D+E +NQI+A MLYLDS D  K +Y+YIN PGG VT  LAIYDTMQ +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGVPKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_OLTVI (ATP-dependent Clp protease proteolytic subunit OS=Oltmannsiellopsis viridis GN=clpP PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.400e-30
Identity = 64/128 (50.00%), Postives = 85/128 (66.41%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE S QWVDL+N LYRERV+F+ Q++D+E +NQ++  MLYL++ + SK +Y+YIN PGG VT  +A+YDTM  +K+ V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGVPKVPFRLPGEPSAQWVDLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEEKSKDLYIYINSPGGSVTCGIAVYDTMNYIKADVTTICVGTAASMASFVLAGGTQGKRIALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CHLVU (ATP-dependent Clp protease proteolytic subunit OS=Chlorella vulgaris GN=clpP PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.673e-29
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE S QWVDL+N LYRERV+F+ Q +D+E +NQ++  MLYL++ + +K +Y+YIN PGG VT  +A+YD M  +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGVPKVPFRLPGEPSAQWVDLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVYDAMNYIKSEVTTICVGTAASMASFILAGGDRGKRIALPHSRIMVHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CHAGL (ATP-dependent Clp protease proteolytic subunit OS=Chaetosphaeridium globosum GN=clpP PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.797e-29
Identity = 59/128 (46.09%), Postives = 82/128 (64.06%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+G PKV YR PG+   QW+DL+N LYRER++F+GQ ++ E +NQI+  MLYL+  D SK +Y+YIN PGG V P +AIYDTMQ ++  + T C+G A               R A+P +R+ +  P
Sbjct:    1 MPVGVPKVPYRLPGDVQVQWIDLYNRLYRERILFLGQTVNYEIANQIIGLMLYLNGDDKSKDMYLYINSPGGAVVPGIAIYDTMQFVEPEIRTICMGVAASMGSFILTGGEITKRIALPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNE7 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.797e-29
Identity = 62/128 (48.44%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG P V YR PG    +W+D++N L  ER+IF+GQ + +  +N I+A +LYLDS D SK +Y+YIN PGG VT  +AIYDTMQ +KSPV T C+G A               R A+P SRI +  P
Sbjct:    1 MPIGVPSVPYRLPGSSFERWIDIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSSKPIYLYINSPGGSVTAGMAIYDTMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNP6 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.797e-29
Identity = 62/128 (48.44%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG P V YR PG    +W+D++N L  ER+IF+GQ + +  +N I+A +LYLDS D SK +Y+YIN PGG VT  +AIYDTMQ +KSPV T C+G A               R A+P SRI +  P
Sbjct:    1 MPIGVPSVPYRLPGSSFERWIDIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSSKPIYLYINSPGGSVTAGMAIYDTMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP1_GLOVI (ATP-dependent Clp protease proteolytic subunit 1 OS=Gloeobacter violaceus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.069e-28
Identity = 61/128 (47.66%), Postives = 84/128 (65.62%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR PG G  QW+D++N L  +R+IF+G+ +D+E +N I+A+MLYLDS D  K +++YIN PGG V+  LAIYDTMQ +++ V T CVG A               R+++P SRI +  P
Sbjct:    1 MPIGIPKVPYRLPG-GQSQWIDIFNRLALDRIIFLGREVDDEIANAIIASMLYLDSEDPEKDIFLYINSPGGSVSAGLAIYDTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMIHQP 127          
The following BLAST results are available for this feature:
BLAST of FC920462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPR2_ARATH2.970e-7168.37ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP2_THEEB1.220e-3253.13ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP3_ANASP3.924e-3151.56Probable ATP-dependent Clp protease proteolytic su... [more]
CLPP2_ANAVT5.125e-3151.56ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_OLTVI7.400e-3050.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLVU3.673e-2949.22ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHAGL4.797e-2946.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNE74.797e-2948.44ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNP64.797e-2948.44ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_GLOVI1.069e-2847.66ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionC32008G01EF RVDevelop1 Citrus clementina cDNA clone C32008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920462 ID=FC920462; Name=FC920462; organism=Citrus clementina; type=EST; length=585bp
TGTCCGTTTCTCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAAC
CTCAAGCTTTATTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAAC
TGGGAAACCTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCC
TCTACTCCGGGATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATG
ATGCCGATTGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATC
TTGGCAATGGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTT
TCATTGGGCAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACG
ATGTTGTATCTAGACAGTGTTGATGATTCCAAAAGGGTTTATATGTACAT
CAACGGTCCTGGTGGGGATGTTACTCCCACCTTGGCAATTTACGACACTA
TGCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTAT
CATTTAGCAGGGTTTCTTCTAGCAGGTGGAGAATAGGGGAATCGGTCTGC
AATGCCTCTTTCGAGAATTGCTTTAGACTCTCCAG
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