FC920467

Overview
NameFC920467
Unique NameFC920467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14149 contig Ccv1_Contig14149:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL6_ARATH (Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.490e-79
Identity = 149/222 (67.12%), Postives = 166/222 (74.77%), Query Frame = 2
Query:   53 MGTEVEVSEPLIEKIAAVNDEEE--EADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            MGTE+  S  + E +     E+     ++ +PEWK+QITIRGL  SA++GTLFCIITHKLNLTVGIIPSLNVAAGLLGFF VKSWT FLSKLGF++KPFT+QENTVIQTCVVACY              MDE+TY+LIGADYPGN AEDV NPGL WMI               PLRKVM+LDYKLTYPSGTATAMLINSFHTNTGAELAG   +CLGKYLS
Sbjct:    1 MGTEIPRSAEISEALLPPESEKTVTATEEHVPEWKEQITIRGLTVSALLGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFFVKSWTGFLSKLGFTVKPFTKQENTVIQTCVVACYGLAFSGGFGSYLIAMDEKTYKLIGADYPGNHAEDVINPGLWWMIGFLFVVSFLGLFSLVPLRKVMVLDYKLTYPSGTATAMLINSFHTNTGAELAGNQVKCLGKYLS 222          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL4_ARATH (Probable metal-nicotianamine transporter YSL4 OS=Arabidopsis thaliana GN=YSL4 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.799e-75
Identity = 142/220 (64.55%), Postives = 160/220 (72.73%), Query Frame = 2
Query:   53 MGTEVEVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            M TE+  S  + E +       +  +  +PEWK+QITIRGL++SA++G LFCIITHKLNLT+GIIPSLNVAAGLLGFF +KSWT FLSKLGF  KPFT+QENTVIQTCVV+CY              MDERTY+LIG+DYPGN  EDV NPGL WM                PLRKVMILDYKLTYPSGTATAMLINSFH NTGAELAGK  +CLGKYLS
Sbjct:    1 METEIPRSTEISETLLLPETNLDHGEY-VPEWKEQITIRGLISSALLGILFCIITHKLNLTIGIIPSLNVAAGLLGFFFIKSWTGFLSKLGFLSKPFTKQENTVIQTCVVSCYGLAYSGGFGSYLIAMDERTYKLIGSDYPGNNPEDVINPGLWWMTGFLFVVSFLGLFCLVPLRKVMILDYKLTYPSGTATAMLINSFHNNTGAELAGKQVKCLGKYLS 219          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL6_ORYSJ (Probable metal-nicotianamine transporter YSL6 OS=Oryza sativa subsp. japonica GN=YSL6 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.679e-70
Identity = 129/219 (58.90%), Postives = 157/219 (71.69%), Query Frame = 2
Query:   62 EVEVSEPLIEKIAAVNDEEEEAD--QPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            + E++ PL+   A    +   A   + +P W++Q+T+RG+V SA++G LFC+ITHKLNLTVG+IPSLNV+AGLLG+FLV+SWT+ L +LGF I PFT+QENTVIQTCVVACY              MD++TY+LIG DYPGNRA DV NP LGWMI                LRKVM++DYKLTYPSGTATAMLINSFHT +GAELA K   CLGKYLS
Sbjct:    7 DAEITGPLLAAAAGGGGDSAAAAGVERVPAWREQVTVRGIVVSAVLGVLFCLITHKLNLTVGVIPSLNVSAGLLGYFLVRSWTAVLGRLGFVIAPFTKQENTVIQTCVVACYGLAFSGGFGSYMLAMDQKTYELIGPDYPGNRAIDVMNPSLGWMIGFMFVVSFLGLFSLVALRKVMVIDYKLTYPSGTATAMLINSFHTTSGAELAEKQVSCLGKYLS 225          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL5_ORYSJ (Probable metal-nicotianamine transporter YSL5 OS=Oryza sativa subsp. japonica GN=YSL5 PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.167e-54
Identity = 98/196 (50.00%), Postives = 131/196 (66.84%), Query Frame = 2
Query:  134 PIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSI---KPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            P+P W+DQ+T+RG+  +A++G+L C++ H+LNLTVG+IP+LNVA+GLL FFL  +W    + LG      +PFTRQENTVIQTC +AC               MD +TY+L+G DYPGNR ED+++P LGWMI                LRKVM++DYKL +P GTATA++INS H  T A+LAG+   CL KY+S
Sbjct:   19 PLPPWRDQLTLRGVAVAAVLGSLLCVVIHRLNLTVGVIPALNVASGLLAFFLATAWRGAAAVLGLGHHRGRPFTRQENTVIQTCAIACGSLAFSGCSSSYIFAMDRKTYELVGQDYPGNRMEDIRDPSLGWMIGFMFLIALIGPFSIVMLRKVMVIDYKLAFPGGTATALMINSLHGKTEADLAGRKVHCLVKYMS 214          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL13_ORYSJ (Probable metal-nicotianamine transporter YSL13 OS=Oryza sativa subsp. japonica GN=YSL13 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.580e-49
Identity = 102/204 (50.00%), Postives = 129/204 (63.24%), Query Frame = 2
Query:   89 EKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLG 700
            E+ AA + E   AD+P+P W++Q+T+R  V S  +  +F +I  KLNLT GIIPSLNV+AGLLGFF V+ WT+ + ++G   +PFTRQENTVIQTCVVA Y              M ER   + G     N A+++KNP LGW+I               PLRKVMI+DYKLTYPSGTATA LIN FHT  GA++A K  + LG
Sbjct:   53 EEAAAPSVERVFADRPVPSWREQLTVRAFVVSFFLVIMFSVIVMKLNLTTGIIPSLNVSAGLLGFFFVRLWTAAIERVGLLRQPFTRQENTVIQTCVVAGYDIAFSGGFGNYILSMSER---IAGLGTEANNAQNIKNPHLGWIIGFLFLVSFIGLFGLVPLRKVMIIDYKLTYPSGTATAFLINGFHTPHGAKIAAKQVKKLG 253          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL10_ORYSJ (Probable metal-nicotianamine transporter YSL10 OS=Oryza sativa subsp. japonica GN=YSL10 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.361e-48
Identity = 104/209 (49.76%), Postives = 130/209 (62.20%), Query Frame = 2
Query:   89 EKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGF-SIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAED--VKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKY 706
            E+ A V+ E     + +P WK+Q+T+R L  SA++G +F +I  KLNLT GIIPSLNV+AGLLGFFL+ SWT  L K G  S++PFTRQENTV+QTCVVAC               M +R      +D  G   ++  +KNP LGWMI               PLRK+MI+DYKL YPSGTATA LINSFHT  GA+LA    + LGK+
Sbjct:   13 EEAAVVSVERVFEGRVVPGWKEQVTLRALAVSALLGAMFSVIVMKLNLTTGIIPSLNVSAGLLGFFLLTSWTKLLDKAGVASVRPFTRQENTVVQTCVVACSGIAFSGGFGSYIFAMSDRI-----SDQSGEARDEHNIKNPSLGWMIGFLFIVSFLGLFSVVPLRKIMIIDYKLIYPSGTATAHLINSFHTPQGAKLAKMQVKMLGKF 216          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL5_ARATH (Probable metal-nicotianamine transporter YSL5 OS=Arabidopsis thaliana GN=YSL5 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.959e-48
Identity = 110/240 (45.83%), Postives = 139/240 (57.92%), Query Frame = 2
Query:   32 PKRNLQIMGTEVEVS--EPLIEKIAAVNDEEEEADQP-----------IPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            P R+ QI+  E++ +   P  EK+   N EE+E ++            +P WK Q+T+R  V S ++  LF  I  KLNLT GIIPSLNV+AGLLGFF VK+WT  L + G   +PFTRQENTVIQTCVVA                M ER      A   G+ +  VK+P LGW+I               PLRK+M++D+KLTYPSGTATA LINSFHT  GA+LA K  + LGK+ S
Sbjct:    8 PDRDRQIVEHELQETGFSPETEKVKNKNFEEDEEEEDESVEKIFESREVPSWKKQLTVRAFVVSFMLSILFSFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKMLHRSGLLKQPFTRQENTVIQTCVVASSGIAFSGGFGTYLFGMSERI-----ATQSGDVSRGVKDPSLGWIIGFLFVVSFLGLFSVVPLRKIMVIDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVRVLGKFFS 242          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL14_ORYSJ (Probable metal-nicotianamine transporter YSL14 OS=Oryza sativa subsp. japonica GN=YSL14 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.152e-47
Identity = 99/202 (49.01%), Postives = 126/202 (62.38%), Query Frame = 2
Query:  101 AVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKY 706
            A + E   AD+ +P W++Q+T+R  V SA++  +F +I  KLNLT GIIPSLNV+AGLLGFF V+ WTS + ++G   +PFTRQENTVIQTCVV+ Y              M E    +         A+++K+P LGWMI               PLRK+MI+DYKLTYPSGTATA LIN FHT  GA+LA K  + LGKY
Sbjct:   61 ATSVERVFADKAVPSWREQLTLRAFVVSALLAVMFSVIVMKLNLTTGIIPSLNVSAGLLGFFFVRLWTSAVERIGLLKQPFTRQENTVIQTCVVSAYGIAFSGGFGSYLFGMSE---TIAKQATEAKDAQNIKDPHLGWMIGFLFLVSFIGLFALVPLRKIMIVDYKLTYPSGTATAYLINGFHTPEGAKLAKKQVKTLGKY 259          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL11_ORYSJ (Probable metal-nicotianamine transporter YSL11 OS=Oryza sativa subsp. japonica GN=YSL11 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.152e-47
Identity = 104/220 (47.27%), Postives = 134/220 (60.91%), Query Frame = 2
Query:   56 GTEVEVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDER-TYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            G E E +E +   +     E+  AD+P+P W++Q+T+R  V   ++  +F II  KL+LT G+IPSLNV+A LLGFFLV+ WT+ + ++GF  +PFTRQENTVIQTCVV+ Y              M E    Q   A+ P N    +KNP LGW+I               P+RKVMI+DYKLTYPSGTATA LIN FHT  GA+LA K  + LGKY S
Sbjct:   37 GEEEEEAEAVAPSV-----EQAFADKPVPSWREQLTVRAFVVGFLLSIMFNIIVMKLSLTTGVIPSLNVSASLLGFFLVRLWTAAIERVGFLKQPFTRQENTVIQTCVVSAYGVAFSGGFGSYLFGMSETIAKQATEANDPMN----IKNPHLGWIIGFMFLVSFVGLFALVPMRKVMIVDYKLTYPSGTATAYLINGFHTPEGADLAKKQVRTLGKYFS 247          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL3_ARATH (Metal-nicotianamine transporter YSL3 OS=Arabidopsis thaliana GN=YSL3 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.504e-47
Identity = 97/216 (44.91%), Postives = 130/216 (60.19%), Query Frame = 2
Query:   68 EVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADY-PGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            E+   +I+ +    +E ++  + IP WK+QIT RG+VAS I+G ++ +I  KLNLT G++P+LNV+A LL F  ++SWT  L+K G   KPFT+QENTV+QTC VACY              ++  TY+  G  +  GN  E  K PG+GWM                PLRK+MI+DYKLTYPSGTATA+LIN FHT  G ++A K      KY S
Sbjct:   13 EIEREVIDDLEETQNEGDDF-KSIPPWKEQITFRGIVASLIIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFLRSWTKLLTKAGIVTKPFTKQENTVVQTCAVACYSIAVGGGFGSYLLGLNRITYEQSGGTHTDGNYPEGTKEPGIGWMTAFLFFTCFVGLLALVPLRKIMIIDYKLTYPSGTATAVLINGFHTPKGNKMAKKQVFGFVKYFS 227          
The following BLAST results are available for this feature:
BLAST of FC920467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
YSL6_ARATH1.490e-7967.12Probable metal-nicotianamine transporter YSL6 OS=A... [more]
YSL4_ARATH3.799e-7564.55Probable metal-nicotianamine transporter YSL4 OS=A... [more]
YSL6_ORYSJ3.679e-7058.90Probable metal-nicotianamine transporter YSL6 OS=O... [more]
YSL5_ORYSJ2.167e-5450.00Probable metal-nicotianamine transporter YSL5 OS=O... [more]
YSL13_ORYSJ3.580e-4950.00Probable metal-nicotianamine transporter YSL13 OS=... [more]
YSL10_ORYSJ1.361e-4849.76Probable metal-nicotianamine transporter YSL10 OS=... [more]
YSL5_ARATH3.959e-4845.83Probable metal-nicotianamine transporter YSL5 OS=A... [more]
YSL14_ORYSJ1.152e-4749.01Probable metal-nicotianamine transporter YSL14 OS=... [more]
YSL11_ORYSJ1.152e-4747.27Probable metal-nicotianamine transporter YSL11 OS=... [more]
YSL3_ARATH1.504e-4744.91Metal-nicotianamine transporter YSL3 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC32008G07EF RVDevelop1 Citrus clementina cDNA clone C32008G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920467 ID=FC920467; Name=FC920467; organism=Citrus clementina; type=EST; length=712bp
GTCGAACAGTCGTAACATTTAGAAGGAGAAACCAAAACGGAATCTTCAAA
TCATGGGAACCGAAGTAGAAGTGTCAGAGCCGTTGATTGAGAAGATCGCG
GCCGTTAATGACGAGGAGGAGGAAGCGGATCAGCCGATTCCGGAATGGAA
GGATCAGATAACGATCAGAGGGCTGGTGGCGAGCGCGATTATGGGGACGC
TCTTCTGCATCATCACGCACAAGCTCAATCTGACGGTCGGAATTATTCCG
TCGCTCAACGTTGCCGCGGGACTGTTAGGCTTCTTCCTCGTGAAGTCGTG
GACGAGCTTCTTGTCGAAGCTAGGGTTTTCGATTAAGCCTTTTACGAGAC
AAGAGAACACCGTCATTCAAACTTGTGTGGTAGCTTGTTATGGCCTCGCT
TTTAGCGGGGGATTCGGTTCATCTTTGCTTGCAATGGATGAAAGAACATA
TCAACTAATTGGTGCTGATTACCCTGGTAACCGGGCAGAAGATGTCAAGA
ACCCAGGGTTGGGTTGGATGATTGGTTTTGTAGTAGTTGTCAGTTTCCTT
GGACTTTTCAGTCTTGTTCCACTCCGTAAGGTTATGATCTTGGATTATAA
ACTTACATATCCCAGTGGAACAGCCACGGCAATGTTAATTAATAGCTTTC
ACACCAACACTGGAGCAGAGCTTGCCGGGAAAGCAAGTCAGTGCCTTGGA
AAATATTTGAGC
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