FC920483

Overview
NameFC920483
Unique NameFC920483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920483_ssr171 microsatellite FC920483_ssr171:171..180. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12617 contig Ccv1_Contig12617:65..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_ACTPL (Riboflavin synthase alpha chain OS=Actinobacillus pleuropneumoniae GN=ribE PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.204e-36
Identity = 80/155 (51.61%), Postives = 103/155 (66.45%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFD 714
            +FTGI+EE+G+I Q+    +   V+ I A  VL+ VHLGD+IAVNG CLTVT F +    FT  +  ETL++TSL EL+  S VNLERA+    R GGH V GH+DGTG I  + P  +S W ++KT   L++YI+ KG I IDG SLTVVD  D
Sbjct:    1 MFTGIIEEVGKIAQIHKQGEFA-VVTINATKVLQDVHLGDTIAVNGVCLTVTSFSSN--QFTADVMSETLKRTSLGELKSNSPVNLERAMAANGRFGGHIVSGHIDGTGEIAEITPAHNSTWYRIKTSPKLMRYIIEKGSITIDGISLTVVDTDD 152          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_SCHPO (Riboflavin synthase alpha chain OS=Schizosaccharomyces pombe GN=rib5 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.060e-35
Identity = 79/156 (50.64%), Postives = 107/156 (68.59%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDVFD 714
            +FTG+VE +G ++ +  + D GF MKI A  +L+  H GDSIAVNGTCLTVT+F      FT G++PE+LR T+L + + G  VNLERAV  ++RMGGHFVQGHVD    IV  + + +++    +  D  +LKYIV KG+IA+DGTSLT+  V D
Sbjct:    1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRY--HFTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDD 154          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_PICGU (Riboflavin synthase alpha chain OS=Pichia guilliermondii GN=RIB5 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.185e-33
Identity = 84/160 (52.50%), Postives = 100/160 (62.50%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLG-----ASNDGGFVMKIR-AKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDV 708
            +FTG+VE +G + Q+      AS   G  M I     +LE V LGDSI  NG CLTVTEF      F  G+SPETLR++ L EL+PGS VNLERAV+   RMGGH VQGHVD    IV+   + +++    K  D    KYIV KGFIAIDGTSLTV DV
Sbjct:    1 MFTGLVEHIGTVLQVTEKDTTASGGDGVSMVIGDCSKILEDVQLGDSICTNGVCLTVTEFDMARSQFKVGISPETLRRSDLGELKPGSKVNLERAVKADVRMGGHVVQGHVDTIATIVNRRGDGNAINFTFKLRDSQYGKYIVEKGFIAIDGTSLTVTDV 160          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_BACSU (Riboflavin synthase alpha chain OS=Bacillus subtilis GN=ribE PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 74/150 (49.33%), Postives = 97/150 (64.67%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTV 699
            +FTGI+EE G IE +  +      + I+   +LE VHLGDSIAVNG CLTVT+F      FT  + PET++ TSL +L  GS VNLERA+    R GGHFV GHVDGT  I  +E + ++++  +K D SL K +V KG I +DG SLT+
Sbjct:    1 MFTGIIEETGTIESMKKAGHA-MALTIKCSKILEDVHLGDSIAVNGICLTVTDFTKN--QFTVDVMPETVKATSLNDLTKGSKVNLERAMAANGRFGGHFVSGHVDGTAEITRIEEKSNAVYYDLKMDPSLTKTLVLKGSITVDGVSLTI 147          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_YEAST (Riboflavin synthase alpha chain OS=Saccharomyces cerevisiae GN=RIB5 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.401e-30
Identity = 77/160 (48.12%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASND---GGFVMKI---RAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVK-TDKSLLKYIVPKGFIAIDGTSLTVVDV 708
            +FTGIVE MG + +    +D   GG  + I    A ++L   H+GDSIAVNG CLTVTEF    + F  G+SPET++++++     G+ VNLERAV    R GGH+VQGHVD    IVS  PE +S+    +  D+   KYIV KGFI IDGTSLT++ V
Sbjct:    1 MFTGIVECMGTVLENNPYDDSESGGQGVSITIGNAGSILTDCHVGDSIAVNGVCLTVTEFNN--DSFKVGISPETIKRSNVASWIQGTQVNLERAVSQDVRFGGHYVQGHVDTVANIVSRRPEGNSIIFGFQLRDQEYFKYIVEKGFICIDGTSLTIIKV 158          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_BACAM (Riboflavin synthase alpha chain OS=Bacillus amyloliquefaciens GN=ribE PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 71/155 (45.81%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFD 714
            +FTGIVEE G I+ +  +      + I A  V   V LGDSIAVNG CLTVT F      FT  + PET++ TSL  L  GS VNLERA+    R GGHFV GHVDGT  I  +E + ++++  +K    L K +V KG I +DG S T+  + D
Sbjct:    1 MFTGIVEETGTIQAIKKTGLS-MALTIAASKVTSDVRLGDSIAVNGICLTVTGFSDN--QFTVDVMPETVKATSLNGLSKGSKVNLERAMSANGRFGGHFVSGHVDGTAEITRIEKKSNAVYYDLKLSPELTKTLVLKGSITVDGVSSTIFGLSD 152          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_MYCTU (Riboflavin synthase alpha chain OS=Mycobacterium tuberculosis GN=ribE PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 74/152 (48.68%), Postives = 93/152 (61.18%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED--FTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTV 699
            +FTGIVEE GE+    A  D    + IR   V      GDSIAVNG CLTV +    L D  FT  +  ETL +++L EL+PGS VNLERA    SR+GGH VQGHVD TG IV+  P E    ++++   S+ +Y+V KG I +DG SLTV
Sbjct:    1 MFTGIVEERGEVTGREALVDAAR-LTIRGPMVTADAGHGDSIAVNGVCLTVVDV---LPDGQFTADVMAETLNRSNLGELRPGSRVNLERAAALGSRLGGHIVQGHVDATGEIVARCPSEHWEVVRIEMPASVARYVVEKGSITVDGISLTV 148          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_MYCBO (Riboflavin synthase alpha chain OS=Mycobacterium bovis GN=ribE PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 74/152 (48.68%), Postives = 93/152 (61.18%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLED--FTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTV 699
            +FTGIVEE GE+    A  D    + IR   V      GDSIAVNG CLTV +    L D  FT  +  ETL +++L EL+PGS VNLERA    SR+GGH VQGHVD TG IV+  P E    ++++   S+ +Y+V KG I +DG SLTV
Sbjct:    1 MFTGIVEERGEVTGREALVDAAR-LTIRGPMVTADAGHGDSIAVNGVCLTVVDV---LPDGQFTADVMAETLNRSNLGELRPGSRVNLERAAALGSRLGGHIVQGHVDATGEIVARCPSEHWEVVRIEMPASVARYVVEKGSITVDGISLTV 148          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_AQUAE (Riboflavin synthase alpha chain OS=Aquifex aeolicus GN=ribE PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26
Identity = 69/152 (45.39%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSME--PEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTV 699
            +FTG+VE++G+++ L  S+ G    K+  +T LE V LGDS++VNG CLTV +  +    F   +SPETL++T+L +L+ G  VNLERA++   R+GGH VQGHVD T  + S     E   L I++  + S+  Y+V KG IA+DG SLTV
Sbjct:    1 MFTGLVEDLGKVKNLTLSSKGA---KLSVETKLEDVKLGDSVSVNGACLTVVDIKSSTLTFD--VSPETLKRTNLGKLKTGDYVNLERALRVGERLGGHIVQGHVDFTAPVKSFNFLGEHYELVIEIPEEWSI--YVVEKGSIALDGISLTV 145          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_PHOLE (Riboflavin synthase alpha chain OS=Photobacterium leiognathi GN=ribE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22
Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVF 711
            +FTGI+E +G I  +   N+   ++       +  V++GDSIA NG CLTV++       +T  LS ET ++T+    + G  VNLE+A+ PT+R+GGH V GHVDG G ++  +    ++ I V     L KY+  KG + IDG SLT+  V+
Sbjct:    1 MFTGIIESIGNIGAIIRHNEDLSIVVNTNNLDISDVNIGDSIATNGVCLTVSKLLPS--GYTADLSLETYKRTAFHSYRIGQEVNLEKAMLPTTRLGGHLVSGHVDGVGEVIEFKRNGRAINIWVAVPVQLKKYLSEKGSVTIDGISLTINAVY 152          
The following BLAST results are available for this feature:
BLAST of FC920483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RISA_ACTPL1.204e-3651.61Riboflavin synthase alpha chain OS=Actinobacillus ... [more]
RISA_SCHPO5.060e-3550.64Riboflavin synthase alpha chain OS=Schizosaccharom... [more]
RISA_PICGU6.185e-3352.50Riboflavin synthase alpha chain OS=Pichia guillier... [more]
RISA_BACSU2.350e-3249.33Riboflavin synthase alpha chain OS=Bacillus subtil... [more]
RISA_YEAST6.401e-3048.13Riboflavin synthase alpha chain OS=Saccharomyces c... [more]
RISA_BACAM7.825e-2845.81Riboflavin synthase alpha chain OS=Bacillus amylol... [more]
RISA_MYCTU6.624e-2748.68Riboflavin synthase alpha chain OS=Mycobacterium t... [more]
RISA_MYCBO6.624e-2748.68Riboflavin synthase alpha chain OS=Mycobacterium b... [more]
RISA_AQUAE3.287e-2645.39Riboflavin synthase alpha chain OS=Aquifex aeolicu... [more]
RISA_PHOLE1.688e-2238.31Riboflavin synthase alpha chain OS=Photobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionC32009A01EF RVDevelop1 Citrus clementina cDNA clone C32009A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920483 ID=FC920483; Name=FC920483; organism=Citrus clementina; type=EST; length=715bp
GGGTTTTTTTGTAGAAATATCTACAACGAAAAAAAATGGCTGCTTCAGCT
AAATTCTCTCTCACACCCTCCTTCAATCCCAGAATCCTATCCCCCTAAAA
CCCTAGTATCCAATTTCCTAACGATCCCTTCAAAATCTTACCTCAAATTC
AACCCCTATTTCAAACCCAGCTCTCTCTCTCACCTCACCACCATACCCAA
ACCCAAATTCAAATCTGGAACCCAGTTTCACAACCGGATGATCCGCTGCC
TTTTCACCGGGATCGTCGAAGAAATGGGGGAAATCGAGCAGCTGGGTGCT
TCCAACGACGGCGGATTCGTCATGAAAATACGTGCGAAAACTGTTCTTGA
AGGCGTCCACTTAGGCGACAGCATTGCTGTTAATGGAACGTGTCTCACTG
TTACGGAATTTGGTACCCAATTGGAAGATTTTACCGATGGATTATCGCCT
GAGACTTTGAGAAAGACTTCTTTGATTGAATTGCAACCGGGTTCGTTGGT
GAATTTGGAGAGGGCAGTACAGCCGACGAGTCGTATGGGCGGGCATTTTG
TGCAGGGGCATGTGGATGGCACGGGGGTGATTGTGTCAATGGAGCCTGAA
GAGGATTCTTTGTGGATTAAAGTGAAAACAGATAAAAGTTTATTGAAGTA
TATAGTCCCTAAAGGGTTTATAGCCATCGATGGTACTAGTTTAACGGTGG
TGGATGTGTTTGATG
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