FC920484

Overview
NameFC920484
Unique NameFC920484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5984 contig Ccv1_Contig5984:236..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C60_ORYSJ (Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.157e-70
Identity = 120/152 (78.95%), Postives = 136/152 (89.47%), Query Frame = 1
Query:  256 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            M+  LMN LRACWRPSS+++    +D AGRQ+GLLWYKD GQH+NGEFSMAVVQANNLLEDQ QIESGPLS L+SGPYGTF+G+YDGHGGPET+ YINDHLF HLKRF SEQ S+S DV+KKAY+ATEDGFFS+VTKQWP+KPQIAAVGSCC
Sbjct:    1 MIVTLMNLLRACWRPSSNQHARAGSDVAGRQDGLLWYKDTGQHVNGEFSMAVVQANNLLEDQCQIESGPLSFLDSGPYGTFVGVYDGHGGPETACYINDHLFHHLKRFASEQNSISADVLKKAYEATEDGFFSVVTKQWPVKPQIAAVGSCC 152          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C46_ARATH (Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.079e-65
Identity = 119/152 (78.29%), Postives = 132/152 (86.84%), Query Frame = 1
Query:  256 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            MLS LM  L AC  PSS      S+D+ G+Q+GLLWYKD GQH+ GEFSMAVVQANNLLEDQSQ+ESGPLSTL+SGPYGTFIGIYDGHGGPETSR++NDHLFQHLKRF +EQ SMSVDVIKKAY+ATE+GF  +VTKQWP KPQIAAVGSCC
Sbjct:    1 MLSTLMKLLSACLWPSSSS--GKSSDSTGKQDGLLWYKDFGQHLVGEFSMAVVQANNLLEDQSQVESGPLSTLDSGPYGTFIGIYDGHGGPETSRFVNDHLFQHLKRFAAEQASMSVDVIKKAYEATEEGFLGVVTKQWPTKPQIAAVGSCC 150          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C79_ARATH (Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.955e-61
Identity = 108/153 (70.59%), Postives = 128/153 (83.66%), Query Frame = 1
Query:  256 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLES-GPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            MLS   NFL +C  PSS    HT +D+ G+Q+GLLWYKD+  H+ G+FSMAVVQANNLLEDQSQ+ESGPL+TL S GPYGTF+G+YDGHGGPETSR++NDHLF HLKRF +EQ SMSVDVI+KAY+ATE+GF  +V KQW +KP IAAVGSCC
Sbjct:    1 MLSLFFNFLTSCLWPSSSTTSHTYSDSKGKQDGLLWYKDSAHHLFGDFSMAVVQANNLLEDQSQVESGPLTTLSSSGPYGTFVGVYDGHGGPETSRFVNDHLFHHLKRFAAEQDSMSVDVIRKAYEATEEGFLGVVAKQWAVKPHIAAVGSCC 153          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C64_ARATH (Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.549e-60
Identity = 106/152 (69.74%), Postives = 132/152 (86.84%), Query Frame = 1
Query:  256 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            MLS LMNFL AC  P SD+   +++D+ GRQEGLLW++D+GQH+ G+FSMAVVQAN+LLEDQSQ+ESG LS+ +SGP+GTF+G+YDGHGGPETSR+INDH+F HLKRFT+EQQ MS +VIKKA+QATE+GF S+VT Q+  +PQIA VGSCC
Sbjct:    1 MLSGLMNFLNACLWPRSDQQARSASDSGGRQEGLLWFRDSGQHVFGDFSMAVVQANSLLEDQSQLESGSLSSHDSGPFGTFVGVYDGHGGPETSRFINDHMFHHLKRFTAEQQCMSSEVIKKAFQATEEGFLSIVTNQFQTRPQIATVGSCC 152          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C28_ORYSJ (Probable protein phosphatase 2C 28 OS=Oryza sativa subsp. japonica GN=Os03g0137200 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.511e-58
Identity = 104/153 (67.97%), Postives = 126/153 (82.35%), Query Frame = 1
Query:  256 MLSRLMNFLRACWRPSSDR-YVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            ML+ +M++ R+CW P S   +    +D AGRQ+GLLWYKD GQ + GEFSMAVVQANNLLEDQSQ+ESG LS  E GP GTFIG+YDGHGGPET+R+INDH+F HL+RF +E + MS DVI+KA+QATE+GF SLV+KQW +KPQIAAVGSCC
Sbjct:    1 MLAAVMDYFRSCWGPRSPAGHRVRGSDVAGRQDGLLWYKDAGQLVTGEFSMAVVQANNLLEDQSQVESGALSMAEPGPQGTFIGVYDGHGGPETARFINDHMFHHLRRFATEHKCMSTDVIRKAFQATEEGFLSLVSKQWSLKPQIAAVGSCC 153          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C72_ORYSJ (Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.149e-55
Identity = 101/154 (65.58%), Postives = 122/154 (79.22%), Query Frame = 1
Query:  256 MLSRLMNFLRACWRPSSDRY--VHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            MLS  M +LR+CW P+S         +D AGRQ+GLLWYKD GQ + GEFSMAVVQANNLLED SQ+ESGPLST +    GT +G+YDGHGGPET+RYINDHLF HL+ F SE + MS DVI+KA++ATE+GFFS+V+ QW M+PQ+AAVGSCC
Sbjct:    1 MLSAAMEYLRSCWGPASSPAGRPRKGSDAAGRQDGLLWYKDAGQLVAGEFSMAVVQANNLLEDHSQVESGPLSTTDPNLQGTLVGVYDGHGGPETARYINDHLFNHLRGFASEHKCMSADVIRKAFRATEEGFFSVVSSQWSMRPQLAAVGSCC 154          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.607e-49
Identity = 84/148 (56.76%), Postives = 115/148 (77.70%), Query Frame = 1
Query:  268 LMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            ++  +  CWR  S +  H++ D  GR +GLLWYKD+G H+ GEFSM+V+QANNLLED S++ESGP+S  +SGP  TF+G+YDGHGGPE +R++N HLF ++++FTSE   MS +VI KA+ ATE+ F SLV +QW +KPQIA+VG+CC
Sbjct:    7 ILRMVAPCWRRPSVKGDHSTRDANGRCDGLLWYKDSGNHVAGEFSMSVIQANNLLEDHSKLESGPVSMFDSGPQATFVGVYDGHGGPEAARFVNKHLFDNIRKFTSENHGMSANVITKAFLATEEDFLSLVRRQWQIKPQIASVGACC 154          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C48_ARATH (Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.361e-48
Identity = 90/143 (62.94%), Postives = 110/143 (76.92%), Query Frame = 1
Query:  289 CWRPSS--DRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            CWRP    +     S DT GR +GLLWYKD+G HI GEFSMAVVQANNLLED SQ+ESGP+S  ESGP  TF+G+YDGHGGPE +R++ND LF ++KR+TSEQ+ MS DVI + + ATE+ F  LV +QW  KPQIA+VG+CC
Sbjct:   13 CWRPFGIGEDSSPGSDDTNGRLDGLLWYKDSGNHITGEFSMAVVQANNLLEDHSQLESGPISLHESGPEATFVGVYDGHGGPEAARFVNDRLFYNIKRYTSEQRGMSPDVITRGFVATEEEFLGLVQEQWKTKPQIASVGACC 155          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C67_ARATH (Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 74/144 (51.39%), Postives = 98/144 (68.06%), Query Frame = 1
Query:  280 LRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            ++ CWR  +   +  S     + +GL WYKD G H  GEFSMA++QAN+++EDQ QIESGPL+       GTF+G+YDGHGGPE SR+I D++F  LK+F SE + +S  VI KA+  T+  F   VTKQWP  PQ+A+VGSCC
Sbjct:    2 VKPCWRIGAG--MERSKINPTKVDGLTWYKDLGLHTFGEFSMAMIQANSVMEDQCQIESGPLTFNNPTVQGTFVGVYDGHGGPEASRFIADNIFPKLKKFASEGREISEQVISKAFAETDKDFLKTVTKQWPTNPQMASVGSCC 143          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C42_ARATH (Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.109e-33
Identity = 69/164 (42.07%), Postives = 104/164 (63.41%), Query Frame = 1
Query:  256 MLSRLMNFLRACWRPSSDRYVHTSADTAGR-----------QEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQS-MSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            M   LMN    C++P      ++ A + G            ++GLLW++D G++  G+FSMAV+QAN +LEDQSQ+ESG         +GTF+G+YDGHGGPE +RY+ DHLF H +  ++E Q  ++ + I++A+ ATE+GF S+V++ W   P +A VG+CC
Sbjct:    1 MSGSLMNLFSLCFKPFGHVCDNSEAGSGGGGGVSGGTGGEGKDGLLWFRDLGKYCGGDFSMAVIQANQVLEDQSQVESGN--------FGTFVGVYDGHGGPEAARYVCDHLFNHFREISAETQGVVTRETIERAFHATEEGFASIVSELWQEIPNLATVGTCC 156          
The following BLAST results are available for this feature:
BLAST of FC920484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
P2C60_ORYSJ2.157e-7078.95Probable protein phosphatase 2C 60 OS=Oryza sativa... [more]
P2C46_ARATH6.079e-6578.29Probable protein phosphatase 2C 46 OS=Arabidopsis ... [more]
P2C79_ARATH6.955e-6170.59Probable protein phosphatase 2C 79 OS=Arabidopsis ... [more]
P2C64_ARATH1.549e-6069.74Probable protein phosphatase 2C 64 OS=Arabidopsis ... [more]
P2C28_ORYSJ5.511e-5867.97Probable protein phosphatase 2C 28 OS=Oryza sativa... [more]
P2C72_ORYSJ1.149e-5565.58Probable protein phosphatase 2C 72 OS=Oryza sativa... [more]
P2C38_ARATH1.607e-4956.76Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
P2C48_ARATH1.361e-4862.94Probable protein phosphatase 2C 48 OS=Arabidopsis ... [more]
P2C67_ARATH1.081e-3751.39Probable protein phosphatase 2C 67 OS=Arabidopsis ... [more]
P2C42_ARATH2.109e-3342.07Probable protein phosphatase 2C 42 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32009A03EF RVDevelop1 Citrus clementina cDNA clone C32009A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920484 ID=FC920484; Name=FC920484; organism=Citrus clementina; type=EST; length=711bp
GAAGCTTTGAAGTAAACAGAAGCTACCGTGTGATTTGGTGGATCTATAGA
TCAAACGGTGTTAAACCCTTGCATGTATTGCTCTGTTTCATTTAGATCTC
CATCGTTTTCATCACTTTAGCTGACGGGAAACTCTGCAACCAGCTTTATT
TTTTGTCGTGAAAGAATTCTGGGTGGGATTTTTATTAGGAATTGTATTTG
CATCCAATTCTGGATGTGGAAGAATAGGAGGCTGTTGGCTGAGGTGAGAT
GAGGGATGTTATCAAGGTTGATGAACTTTCTGAGGGCCTGCTGGCGGCCG
TCCTCGGACCGATATGTCCATACGAGTGCGGATACAGCAGGCCGGCAAGA
GGGGCTACTTTGGTACAAAGACAATGGGCAACACATAAATGGTGAATTCT
CTATGGCCGTTGTTCAGGCTAACAATTTGCTTGAGGACCAGAGCCAGATT
GAGTCTGGCCCCTTGAGCACTCTTGAGTCTGGTCCTTATGGCACTTTTAT
TGGTATCTATGATGGCCATGGCGGGCCTGAGACTTCACGATACATCAATG
ATCACCTGTTTCAGCATCTAAAGAGGTTCACATCAGAGCAGCAATCCATG
TCTGTGGACGTGATAAAGAAAGCTTATCAAGCTACGGAAGATGGATTTTT
CTCCCTTGTAACTAAACAATGGCCTATGAAGCCTCAGATAGCCGCTGTTG
GATCTTGCTGT
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