FC920493

Overview
NameFC920493
Unique NameFC920493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920493_ssr39 microsatellite FC920493_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14100 contig Ccv1_Contig14100:2..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.492e-64
Identity = 128/214 (59.81%), Postives = 142/214 (66.36%), Query Frame = 3
Query:  102 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINPCFAVI 743
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV G+                                      YGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN   AV+
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGD--------------------------------------YGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVV 176          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 51/142 (35.92%), Postives = 66/142 (46.48%), Query Frame = 3
Query:  282 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            ++YGPDR  FL  G    ++ PEYLTGE PG+                                      YG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     LNY G
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGD--------------------------------------YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLG 133          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        +IP YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR ++L        E P YLTGE PG+                                      YG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 156          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR ++L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 160          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 52/141 (36.88%), Postives = 66/141 (46.81%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR ++L  G L   E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR ++L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G
Sbjct:   62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 160          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 150          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 51/141 (36.17%), Postives = 63/141 (44.68%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148          
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 151          
The following BLAST results are available for this feature:
BLAST of FC920493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CB26_ARATH9.492e-6459.81Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE6.665e-1735.92Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI9.625e-1636.17Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2B_PINSY1.257e-1536.17Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY1.642e-1536.17Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB29_MAIZE1.642e-1536.88Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2A_PYRPY2.144e-1536.17Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB28_PEA2.144e-1536.17Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_PETSP2.144e-1536.17Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PEA2.144e-1536.17Chlorophyll a-b binding protein AB80, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC32009B04EF RVDevelop1 Citrus clementina cDNA clone C32009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920493 ID=FC920493; Name=FC920493; organism=Citrus clementina; type=EST; length=744bp
ACTCTCATCTTCACCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGC
AACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTC
CATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTG
TTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTT
GCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGT
CGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACC
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGAGTAGGATTGTCCTTCTTCTTCCCT
TCAGGGCCTCAGATGATTTTTCGTGAACATTGTTTAGTTGAATGTTTTTT
AAAACATTAATACATAATGAATTTTGTTGCTTTAATGCAGCTATGGTTAC
GATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGC
ATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCA
TCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCT
GTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTA
CTTCGGAAAGAACATCCCAATCAACCCTTGTTTTGCTGTCATTG
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