FC920499

Overview
NameFC920499
Unique NameFC920499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920499_ssr37 microsatellite FC920499_ssr37:37..50. BLAST: Citrus ESTs to Prunus persica proteins V1
FC920499_ssr216 microsatellite FC920499_ssr216:216..227. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13253 contig Ccv1_Contig13253:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.932e-63
Identity = 127/191 (66.49%), Postives = 139/191 (72.77%), Query Frame = 2
Query:   89 MSLTIPTNLSKPLLKPRSNSQLSHA-KLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            MSLTIP NL   +L PRSN  L+ +   S     C                   ++AF             P PAVADISGLTPCK+SKQFAKREKQQ+KKLESS KLYAP+SAPALA+ A +EKTKRRFDNYGKYGLLCGSDGLPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAISGEKKP
Sbjct:    1 MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQS-------MKAFSAAVALSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKP 181          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.060e-61
Identity = 126/191 (65.97%), Postives = 134/191 (70.16%), Query Frame = 2
Query:   89 MSLTIPTNLSKPLL-KPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            MS TIPTNL KPL  KP+  S  S A  SK +                        A              P  A+ADI+GLTPCKESKQFAKREKQ LKKL++S KLYA DSAPALAIKATMEKTK+RFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP
Sbjct:    1 MSFTIPTNLYKPLATKPKHLSSSSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAALALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKP 191          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.974e-61
Identity = 125/192 (65.10%), Postives = 133/192 (69.27%), Query Frame = 2
Query:   89 MSLTIPTNLSKPL--LKPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            MS TI T+  +PL     +S+   S +K++   I C                   L A                PA ADISGLTPCKESKQFAKREKQ LKKLESS KLYAPDSAPALAIKATMEKTKRRFDNYGK GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP
Sbjct:    1 MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAALALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKP 192          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 9.286e-58
Identity = 104/120 (86.67%), Postives = 113/120 (94.17%), Query Frame = 2
Query:  299 PQPAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            P PA ADI+GLTPCKESK FAKREKQ +KKL SS K YAPDSAPALAI+AT++KTKRRF+NYGK+GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+SGEKKP
Sbjct:   72 PPPAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKP 191          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.958e-35
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2
Query:  299 PQPAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLI----VSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            P  A+ADI+GLTPC ESK +AK EK++LK LE   K Y  DSAPA+A+KATME+TK RF NY K GLLCG+DGLPHLI    ++    H GE   P   FLY+AG+IG+VGR YLIA+ GE KP
Sbjct:   57 PSAAMADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGNDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKP 180          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.204e-33
Identity = 66/120 (55.00%), Postives = 81/120 (67.50%), Query Frame = 2
Query:  299 PQPAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            P  + AD++GL PCK SK+F +R    +KKLES    Y P++ P LA++  + KTK RF  YG  GLLCG+DGLPHLI  G   H GEF+ PGL FLYIAGWIGWVGR+Y+   S   KP
Sbjct:   17 PVASHADVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFTQYGNAGLLCGTDGLPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKP 136          

HSP 2 Score: 21.557 bits (44), Expect = 6.204e-33
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  664 KEIIIDVPLA 693
            KEIIIDVP+A
Sbjct:  139 KEIIIDVPVA 148          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 64/120 (53.33%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  299 PQPAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            P  A A+++GL PCK+S  F KR    +KKL++    Y  D+ PALA+   +EKTK RF  YG+ GLLCG+DGLPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   KP
Sbjct:   15 PIIANAEVAGLVPCKDSAAFNKRMVNSVKKLQARLAKYDADTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKP 134          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_ODOSI (Photosystem I reaction center subunit III OS=Odontella sinensis GN=psaF PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 66/120 (55.00%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  299 PQPAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            P  A+ADI GLT C ES  F KR K  +KKLE     Y   S PALA++  +E+T+ RFD Y +  LLCG+DGLPHLI  G   H  EFI PG  F+YI+GWIGWVGR YL A+S  K P
Sbjct:   19 PNRALADIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGSPPALALQQQIERTQARFDKYSRSELLCGTDGLPHLIADGRWSHAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTKNP 138          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_CYAPA (Photosystem I reaction center subunit III OS=Cyanophora paradoxa GN=psaF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.377e-31
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 2
Query:  302 QPAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAIS 643
            +P  AD++GL PC +S  F +R K   ++LE+  K Y P SAPA A++  ++KT++RFD Y   GLLCG+DGLPHLI  G   H GEF  PGLLFLYIAG+IGW GRSYL A++
Sbjct:   21 RPVRADVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRFDKYRNSGLLCGADGLPHLITDGRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVA 134          

HSP 2 Score: 21.9422 bits (45), Expect = 9.377e-31
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  664 KEIIIDVPLASRXV 705
            KEIIID+P+A + V
Sbjct:  142 KEIIIDIPVALQSV 155          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 2
Query:  314 ADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            A+++GL PCK+S  F KR    +KKL++    Y  ++ PALA+   +EKTK RF  YG+ GLLCG+DGLPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   KP
Sbjct:   24 AEVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKP 138          
The following BLAST results are available for this feature:
BLAST of FC920499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAF_ARATH1.932e-6366.49Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SPIOL1.060e-6165.97Photosystem I reaction center subunit III, chlorop... [more]
PSAF_FLATR8.974e-6165.10Photosystem I reaction center subunit III, chlorop... [more]
PSAF_HORVU9.286e-5886.67Photosystem I reaction center subunit III, chlorop... [more]
PSAF_CHLRE4.958e-3560.48Photosystem I reaction center subunit III, chlorop... [more]
PSAF_GUITH6.204e-3355.00Photosystem I reaction center subunit III OS=Guill... [more]
PSAF_PORYE1.950e-3153.33Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_ODOSI4.344e-3155.00Photosystem I reaction center subunit III OS=Odont... [more]
PSAF_CYAPA9.377e-3155.26Photosystem I reaction center subunit III OS=Cyano... [more]
PSAF_PORPU1.651e-3053.04Photosystem I reaction center subunit III OS=Porph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009C02EF RVDevelop1 Citrus clementina cDNA clone C32009C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920499 ID=FC920499; Name=FC920499; organism=Citrus clementina; type=EST; length=705bp
GATTTCACGTCCATCTCCGCTTCTCCATTAGACACTCACACACACACACA
CTCTCACCCTGAAAGAAAAGAAGAAAAGGAAAAAGAAGATGTCTCTGACA
ATTCCAACAAATCTTTCAAAACCCCTATTGAAGCCAAGATCAAACTCTCA
GTTGAGCCATGCAAAATTATCGAAACAAATGATCACGTGCTCTTCTTCCG
CTGGTTCTGAAGAGACTTCTTCTTCTTCTGGCAAGGCCGCCAAGCCGCTC
CAGGCTTTCTCAGCAGCCCTTGCACTCTCCTCAATTCTGCTATCAGCCCC
ACAGCCCGCAGTTGCCGACATCAGCGGCCTCACCCCCTGCAAAGAGTCCA
AACAATTCGCCAAGCGCGAGAAGCAGCAGCTCAAGAAGCTCGAGTCTTCA
CCAAAACTGTACGCTCCCGACAGCGCCCCGGCTCTCGCAATCAAAGCCAC
CATGGAGAAGACAAAACGGCGGTTTGACAACTACGGGAAGTACGGGTTGC
TGTGCGGGTCAGATGGGTTGCCGCATCTGATTGTGAGCGGTGACCAGAGG
CACTGGGGTGAGTTTATCACTCCGGGGTTGTTGTTTTTGTACATAGCTGG
ATGGATCGGGTGGGTTGGCAGAAGCTACTTGATCGCCATTAGCGGGGAAA
AGAAGCCGCCATGAAGGAGATCATCATTGATGTTCCTTTGGCTTCCAGGN
TGGTC
back to top