FC920504

Overview
NameFC920504
Unique NameFC920504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8297 contig Ccv1_Contig8297:332..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK2A_MAIZE (Casein kinase II subunit alpha OS=Zea mays GN=ACK2 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.630e-74
Identity = 132/160 (82.50%), Postives = 137/160 (85.62%), Query Frame = 1
Query:  256 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            MSKARVY DVNVLRPKEYWDYE+LTVQWG+QDDYEVVRKVGRGKYSEVFEGINVN NE+C                   LQNLCGGPN+VKLLDIVRDQHSKTPSLIFEYVN+TDFKVLYPTLTDYDIRYYIYELLKALDYCHSQG MHRDVKPHN MID
Sbjct:    1 MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMID 160          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK22_ARATH (Casein kinase II subunit alpha-2 OS=Arabidopsis thaliana GN=CKA2 PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 4.946e-73
Identity = 129/160 (80.62%), Postives = 137/160 (85.62%), Query Frame = 1
Query:  256 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            MSKARVYTDVNV+RPK+YWDYESL VQWG+QDDYEVVRKVGRGKYSEVFEGIN+N NE+C                   LQNLCGGPN+VKLLD+VRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALD+CHSQG MHRDVKPHN MID
Sbjct:    1 MSKARVYTDVNVIRPKDYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGINMNNNEKCIIKILKPVKKKKIRREIKILQNLCGGPNIVKLLDVVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMID 160          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK21_ARATH (Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.206e-72
Identity = 128/160 (80.00%), Postives = 137/160 (85.62%), Query Frame = 1
Query:  256 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            MSKARVYT+VNV+RPK+YWDYESL VQWG+QDDYEVVRKVGRGKYSEVFEGINVN+ E+C                   LQNLCGGPN+VKLLD+VRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALD+CHSQG MHRDVKPHN MID
Sbjct:    1 MSKARVYTEVNVIRPKDYWDYESLIVQWGEQDDYEVVRKVGRGKYSEVFEGINVNSKEKCIIKILKPVKKKKIRREIKILQNLCGGPNIVKLLDVVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMID 160          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK23_ARATH (Probable casein kinase II subunit alpha OS=Arabidopsis thaliana GN=At2g23080 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.078e-71
Identity = 128/160 (80.00%), Postives = 134/160 (83.75%), Query Frame = 1
Query:  256 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            MSKARVYTDVNV+RPKEYWDYESL VQWG QDDYEVVRKVGRGKYSEVFEG NVNTNERC                   LQNLCGGPN+VKL DIVRD+HSKTPSL+FE+VNS DFKVLYPTLTDYDIRYYIYELLKALD+CHSQG MHRDVKPHN MID
Sbjct:    1 MSKARVYTDVNVVRPKEYWDYESLVVQWGHQDDYEVVRKVGRGKYSEVFEGKNVNTNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLYDIVRDEHSKTPSLVFEFVNSVDFKVLYPTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMID 160          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK21_RAT (Casein kinase II subunit alpha OS=Rattus norvegicus GN=Csnk2a1 PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 3.804e-57
Identity = 102/162 (62.96%), Postives = 123/162 (75.93%), Query Frame = 1
Query:  250 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            P  S+ARVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+                    L+NL GGPN++ L DIV+D  S+TP+L+FE+VN+TDFK LY TLTDYDIR+Y+YE+LKALDYCHS G MHRDVKPHN MID
Sbjct:    4 PVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMID 165          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK21_MOUSE (Casein kinase II subunit alpha OS=Mus musculus GN=Csnk2a1 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.804e-57
Identity = 102/162 (62.96%), Postives = 123/162 (75.93%), Query Frame = 1
Query:  250 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            P  S+ARVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+                    L+NL GGPN++ L DIV+D  S+TP+L+FE+VN+TDFK LY TLTDYDIR+Y+YE+LKALDYCHS G MHRDVKPHN MID
Sbjct:    4 PVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMID 165          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK21_HUMAN (Casein kinase II subunit alpha OS=Homo sapiens GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.804e-57
Identity = 102/162 (62.96%), Postives = 123/162 (75.93%), Query Frame = 1
Query:  250 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            P  S+ARVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+                    L+NL GGPN++ L DIV+D  S+TP+L+FE+VN+TDFK LY TLTDYDIR+Y+YE+LKALDYCHS G MHRDVKPHN MID
Sbjct:    4 PVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMID 165          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK21_CHICK (Casein kinase II subunit alpha OS=Gallus gallus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.804e-57
Identity = 102/162 (62.96%), Postives = 123/162 (75.93%), Query Frame = 1
Query:  250 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            P  S+ARVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+                    L+NL GGPN++ L DIV+D  S+TP+L+FE+VN+TDFK LY TLTDYDIR+Y+YE+LKALDYCHS G MHRDVKPHN MID
Sbjct:    4 PVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMID 165          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK21_BOVIN (Casein kinase II subunit alpha OS=Bos taurus GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.804e-57
Identity = 102/162 (62.96%), Postives = 123/162 (75.93%), Query Frame = 1
Query:  250 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            P  S+ARVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+                    L+NL GGPN++ L DIV+D  S+TP+L+FE+VN+TDFK LY TLTDYDIR+Y+YE+LKALDYCHS G MHRDVKPHN MID
Sbjct:    4 PVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMID 165          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK2A_DICDI (Casein kinase II subunit alpha OS=Dictyostelium discoideum GN=casK PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.969e-57
Identity = 100/159 (62.89%), Postives = 120/159 (75.47%), Query Frame = 1
Query:  259 SKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            +KAR+Y DVN+ +PKEYW+YE+L V+W  QDDYE++RK+GRGKYSEVFEG N+  NE+C                   LQNLCGGPN++ L D+VRD  SKTPSLIFEY+N+TDFK L PTLTD+D+RYYI ELL ALD+CHS G MHRDVKP N MID
Sbjct:   15 NKARIYCDVNLHKPKEYWNYEALNVKWETQDDYEIIRKIGRGKYSEVFEGANIKNNEKCVIKVLKPVKKKKIKREIKILQNLCGGPNIITLYDVVRDPQSKTPSLIFEYINNTDFKHLSPTLTDFDVRYYIRELLHALDFCHSNGIMHRDVKPSNVMID 173          
The following BLAST results are available for this feature:
BLAST of FC920504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CSK2A_MAIZE7.630e-7482.50Casein kinase II subunit alpha OS=Zea mays GN=ACK2... [more]
CSK22_ARATH4.946e-7380.63Casein kinase II subunit alpha-2 OS=Arabidopsis th... [more]
CSK21_ARATH3.206e-7280.00Casein kinase II subunit alpha-1 OS=Arabidopsis th... [more]
CSK23_ARATH2.078e-7180.00Probable casein kinase II subunit alpha OS=Arabido... [more]
CSK21_RAT3.804e-5762.96Casein kinase II subunit alpha OS=Rattus norvegicu... [more]
CSK21_MOUSE3.804e-5762.96Casein kinase II subunit alpha OS=Mus musculus GN=... [more]
CSK21_HUMAN3.804e-5762.96Casein kinase II subunit alpha OS=Homo sapiens GN=... [more]
CSK21_CHICK3.804e-5762.96Casein kinase II subunit alpha OS=Gallus gallus GN... [more]
CSK21_BOVIN3.804e-5762.96Casein kinase II subunit alpha OS=Bos taurus GN=CS... [more]
CSK2A_DICDI4.969e-5762.89Casein kinase II subunit alpha OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC32009C07EF RVDevelop1 Citrus clementina cDNA clone C32009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920504 ID=FC920504; Name=FC920504; organism=Citrus clementina; type=EST; length=736bp
GAAGCCAAACACAAACACCCAGCAGTACTTGCCGCACAGGTACAGGTACT
TCCCCTCCGCTTCTTGTTAGCGTGCGCCGTTCTTGCCTTGCGTGCGCCCA
TCGCGCACCATCCTATCCTGCGCACCCCCTGCCGAAGCTCCACATACAAT
CTTAACATCATCACAGATACTATCGCCGCTACTACCGTTGTCTACGAGGG
CGCTATCATCGATAAGATCGAGGAACGAAATCTCGCCGAGATCCCGCTGC
CGGCGATGTCGAAGGCTCGAGTTTATACCGACGTTAACGTTCTTCGGCCT
AAGGAATACTGGGATTACGAGTCGCTCACTGTTCAATGGGGTGATCAAGA
TGATTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGTGAAGTTT
TTGAAGGCATAAATGTGAATACAAATGAGCGATGCATCATTAAGATCCTC
AAGCCTGTTAAGAAAAAGAAGATAAAGAGGGAGATAAAAATACTTCAGAA
CCTCTGTGGTGGTCCAAATGTTGTAAAGCTTCTTGATATTGTTAGAGATC
AGCACTCAAAAACTCCTAGCTTGATATTTGAGTATGTGAACAGCACTGAT
TTTAAAGTTTTGTACCCCACATTGACTGACTATGACATACGCTATTACAT
ATACGAGCTTCTGAAGGCATTAGATTACTGCCATTCACAGGGAAATATGC
ATAGAGATGTCAAGCCTCACAATGNTATGATAGACC
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