FC920515

Overview
NameFC920515
Unique NameFC920515
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS21_ARATH (3-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana GN=KCS21 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.522e-63
Identity = 123/184 (66.85%), Postives = 154/184 (83.70%), Query Frame = 3
Query:  180 KWVLQKRGQC-CYMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFART--DISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTTKTALH-CCEHESMGP 719
            K+V ++R Q  CYML YECYK  +E R+LDTE+CA+VV RNK LGLEEYRF L+ M SSGIGEETYGPRNV+EGRE+SP+L +A SEMDEI+FDTLDKLF +T   ISPS+ID+LVVNVSLF+P+PSLTSR+INRY +R DIK++NLSG+GCSASV+++D+VQ++F T + AL      E+MGP
Sbjct:   22 KFVFKRRNQRNCYMLHYECYKGMEE-RKLDTETCAKVVQRNKNLGLEEYRFLLRTMASSGIGEETYGPRNVLEGREDSPTLLDAHSEMDEIMFDTLDKLFHKTKGSISPSDIDILVVNVSLFAPSPSLTSRVINRYKMREDIKSYNLSGLGCSASVISIDIVQRMFETRENALALVVSTETMGP 204          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS12_ARATH (3-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana GN=KCS12 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 94/182 (51.65%), Postives = 130/182 (71.43%), Query Frame = 3
Query:  180 KWVLQKRGQCCYMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRT--TKTALHCCEHESMGP 719
            K +  K+ + CY+L Y+C+KP D+ R + T+    +++RN+ LGL EY+F LK +VSSGIGE+TY PR V EGREE PSL +  SEM+E   D++ KL  R  ISP +ID+LVVNVS+ S  PSL SRIIN Y +R+D+K FNL+GMGCSAS+++VD+V+ +F++   K AL     ES+ P
Sbjct:   21 KLIDSKQDKDCYILDYQCHKPTDD-RMVSTQFSGEIIYRNQNLGLTEYKFLLKAIVSSGIGEQTYAPRLVFEGREERPSLQDGISEMEEFYVDSIGKLLERNQISPKDIDILVVNVSMLSSTPSLASRIINHYKMRDDVKVFNLTGMGCSASLISVDIVKNIFKSYANKLAL-VATSESLSP 200          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS3_ARATH (3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.587e-47
Identity = 90/170 (52.94%), Postives = 124/170 (72.94%), Query Frame = 3
Query:  180 KWVLQKRGQCCYMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTTKTAL 689
            K +  KR Q CY+L Y+C+KP D+ R ++T+    ++ RNK L L EY+F LK +VSSGIGE+TY PR   EGRE+ P+L +  SEM+E   DT++K+  R  ISPSEID+LVVNVS+ +  PSL++RIIN Y +R DIK FNL+ MGCSASV+++D+V+ +F+T K  L
Sbjct:   64 KRIDSKRDQNCYILDYQCHKPSDD-RMVNTQFSGDIILRNKHLRLNEYKFLLKAIVSSGIGEQTYAPRLFFEGREQRPTLQDGLSEMEEFYIDTIEKVLKRNKISPSEIDILVVNVSMLNSTPSLSARIINHYKMREDIKVFNLTAMGCSASVISIDIVKNIFKTYKNKL 232          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 60/158 (37.97%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  198 RGQCCYMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            R +  Y++ + CYKP DE R++  +S   +   N     +  +FQ +    +G+G+ETY PR +     +  +++EA +E + ++F  LD LF +T I P+E+ +L+VN SLF+P PSL++ I+N Y +R DIK++NL GMGCSA ++++DL   L +
Sbjct:  118 RSKPVYLVDFSCYKPEDE-RKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSTPPKL-NMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNCSLFNPTPSLSAMIVNHYKMREDIKSYNLGGMGCSAGLISIDLANNLLK 273          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 59/159 (37.11%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  198 RGQCCYMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRT 674
            R +  Y++ + CYKP DE  ++  E    +  ++ K   E   F+ + + +SGIG+ETY PR++    E   ++ E   E   +IF  LD+LF +T + P ++ VLVVN S+F+P PSL++ +IN Y +R +I ++NL GMGCSA ++A+DL + + ++
Sbjct:  117 RPRSVYLIDFACYKPSDE-HKVTKEEFIELARKSGKFDEETLGFKKRILQASGIGDETYVPRSI-SSSENITTMKEGREEASTVIFGALDELFEKTRVKPKDVGVLVVNCSIFNPTPSLSAMVINHYKMRGNILSYNLGGMGCSAGIIAIDLARDMLQS 273          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.030e-27
Identity = 66/158 (41.77%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  198 RGQCCYMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            R +  Y+L Y CY P   ++++  +         +        FQ K ++ SG+GEETY P ++       P++A A  E +++IF  LD LF  T I+P EI VLVVN SLF+P PSL++ I+N+Y LR +IK+FNL GMGCSA V+AVDL   + +
Sbjct:   78 RPRSIYLLDYSCYLP-PSSQKVSYQKFMNNSSLIQDFSETSLEFQRKILIRSGLGEETYLPDSI-HSIPPRPTMAAAREEAEQVIFGALDNLFENTKINPREIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIKSFNLGGMGCSAGVIAVDLASDMLQ 233          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.677e-27
Identity = 64/156 (41.03%), Postives = 103/156 (66.03%), Query Frame = 3
Query:  213 YMLAYECYKPCDETRRLDTESC---ARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            Y++ Y CYKP   T R+   +    +R++ ++K   +E   FQ++ +  SG+GEET  P   +     +P++  A SE   +IF+ +D LF +T + P ++D+L+VN SLFSP PSL++ +IN+Y LR++IK+FNLSGMGCSA +++VDL + L +
Sbjct:   90 YLVDYSCYKP-PVTCRVPFATFMEHSRLILKDKPKSVE---FQMRILERSGLGEETCLPP-AIHYIPPTPTMDAARSEAQMVIFEAMDDLFKKTGLKPKDVDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISVDLARDLLQ 240          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS13_ARATH (3-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana GN=HIC PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 59/158 (37.34%), Postives = 97/158 (61.39%), Query Frame = 3
Query:  198 RGQCCYMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            R +  Y++ + C++P D  + + +E+   +    +    E  +F  + +  SG+G++TY PR ++     +PS+ EA  E + +IF  L+ LF +T I P E+ + +VN SLF+P PSL+S I+NRY L+ D+K +NLSGMGCSA  ++VDL   L +
Sbjct:   56 RSKPVYLVDFSCHQPTDSCK-ISSETFFNMAKGAQLYTDETIQFMTRILNRSGLGDDTYSPRCMLTS-PPTPSMYEARHESELVIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLKTDVKTYNLSGMGCSAGAISVDLATNLLK 211          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 63/156 (40.38%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  213 YMLAYECYKPCDETRRLDTESC---ARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            Y++ Y CYKP   T R+   S    +R++ ++    +E   FQ++ +  SG+GEET  P   +     +P++  A +E   +IF  ++ LF  T + P +ID+L+VN SLFSP PSL++ IIN+Y LR++IK++NLSGMGCSAS+++VD+ + L +
Sbjct:   85 YLVDYSCYKP-PVTCRVPFSSFMEHSRLILKDNPKSVE---FQMRILERSGLGEETCLPP-AIHYIPPTPTMESARNEAQMVIFTAMEDLFKNTGLKPKDIDILIVNCSLFSPTPSLSAMIINKYKLRSNIKSYNLSGMGCSASLISVDVARDLLQ 235          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 60/159 (37.74%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  213 YMLAYECYKPCDETRRLDTESCARVVW--RNKKLGL---EEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRT 674
            Y++ + C+KP DE+R+     C + ++  R+K  G    E   FQ K +  SG+GE TY P  V+     +P + EA  E + ++F  +D+L A+T+++P +I +L+VN SLF+P PSL++ ++N Y LR +I ++NL GMGCSA ++++DL + L  +
Sbjct:  101 YLVNFSCFKP-DESRK-----CTKKIFMDRSKLTGSFTEENLEFQRKILQRSGLGESTYLPEAVLNV-PPNPCMKEARKEAETVMFGAIDELLAKTNVNPKDIGILIVNCSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKHLLHS 252          
The following BLAST results are available for this feature:
BLAST of FC920515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS21_ARATH1.522e-6366.853-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana... [more]
KCS12_ARATH3.406e-4751.653-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana... [more]
KCS3_ARATH7.587e-4752.943-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana ... [more]
KCS1_ARATH2.711e-2837.973-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS10_ARATH7.888e-2837.113-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS2_ARATH1.030e-2741.77Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS6_ARATH6.677e-2741.033-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS13_ARATH4.328e-2637.343-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana... [more]
KCS5_ARATH1.259e-2540.383-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]
KCS11_ARATH1.259e-2537.743-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC32009D10EF RVDevelop1 Citrus clementina cDNA clone C32009D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920515 ID=FC920515; Name=FC920515; organism=Citrus clementina; type=EST; length=720bp
CCGGGGGCTCATAAAAAAGTTCAAATTCGACTTCCTACGTAAAGAAAGAC
AGGGAAGTCTAGAGATTTTCTTTTTTTCTTTCCCTCCCTTCTCTCTTTGT
CAATTGAGTTATTTTTTTTTCTTTTATCATGGCATTATTGTACTTGTTAC
CTCTTTTTTATATCATTTTTCACTTGTATAAGTGGGTTCTTCAGAAAAGA
GGCCAATGCTGCTATATGCTTGCTTATGAGTGCTACAAGCCATGTGACGA
AACCAGGAGGCTTGACACTGAATCCTGTGCAAGAGTTGTTTGGAGAAACA
AGAAACTGGGGCTTGAAGAATACAGGTTTCAGTTAAAGAACATGGTCAGC
TCAGGCATCGGAGAGGAAACTTACGGCCCAAGAAACGTCGTTGAAGGCAG
AGAAGAGTCACCTTCTTTAGCTGAGGCATTTTCAGAAATGGATGAAATCA
TTTTTGACACACTTGACAAGCTCTTTGCAAGAACAGATATTTCTCCATCT
GAAATTGACGTTCTTGTCGTGAATGTGTCGCTATTTTCTCCTGCTCCTTC
TCTTACATCTCGAATTATAAATCGCTACAACCTGAGGAACGATATTAAGG
CCTTCAATTTATCCGGAATGGGCTGCAGTGCAAGCGTGGTAGCCGTTGAT
CTTGTGCAGCAGCTCTTCAGAACTACAAAAACAGCTTTGCATTGTTGTGA
GCACGAGTCCATGGGACCTA
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